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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.hor   HD1   histone deacetylase 1 
 ath-u.5   HD1   histone deacetylase 1 
 ath-r.7   HD1   histone deacetylase 1 
 ath-m.9   HD1   histone deacetylase 1 
 ath-e.2   HD1   histone deacetylase 1 
 ath-m.4.bio   HD1   histone deacetylase 1 
 ath-m.4.lig   HD1   histone deacetylase 1 
 ath-m.4.str   HD1   histone deacetylase 1 
 ath-m.4.tis   HD1   histone deacetylase 1 
 ath-u.5   HDA9   histone deacetylase 9 
 bra-r.6   103873661   histone deacetylase 9 
 bra-r.6   HD1   histone deacetylase 19 
 bna-r.1   106365662   histone deacetylase 19 
 bna-r.1   106347665   histone deacetylase 9 
 bna-r.1   106445271   histone deacetylase 19 
 ghi-r.1   107908991   histone deacetylase 19 
 ghi-r.1   107928880   histone deacetylase 19 
 ghi-r.1   121214805   histone deacetylase 19 
 cit-r.1   102612639   histone deacetylase 9 
 cit-r.1   102626043   histone deacetylase 19 
 gma-u.5   HDA1   histone deacetylase 
 gma-u.5   HDA13   histone deacetylase 
 gma-u.5   HDA12   histone deacetylase 
 vvi-u.5   100240976   histone deacetylase 9 
 vvi-u.5   100248276   histone deacetylase 9 
 vvi-u.5   100244967   histone deacetylase 19 
 ppo-u.5   7490755   histone deacetylase 9 
 ppo-u.5   7496475   histone deacetylase 19 
 ppo-u.5   18098185   histone deacetylase 19 
 mtr-u.5   11446252   histone deacetylase 9 
 mtr-u.5   25494460   histone deacetylase 19 
 mtr-u.5   25490343   histone deacetylase 19 
 sly-u.5   HDA1   histone deacetylase 1 
 sly-u.5   101251648   histone deacetylase 9 
 sot-r.1   102606021   histone deacetylase 19 
 sot-r.1   102596222   histone deacetylase 9 
 nta-r.1   107779274   histone deacetylase 9 
 nta-r.1   107814744   histone deacetylase 19 
 nta-r.1   107823928   histone deacetylase 9 
 osa-u.5   4335765   histone deacetylase 9 
 osa-u.5   4328720   histone deacetylase 2-like 
 osa-u.5   4328717   histone deacetylase 3-like 
 zma-u.5   100193206   uncharacterized LOC100193206 
 zma-u.5   541931   histone deacetylase HDA101 
 zma-u.5   541953   histone deacetylase 
 tae-r.2   123136961   probable histone deacetylase 19 
 tae-r.2   780688   probable histone deacetylase 19 
 tae-r.2   123169305   histone deacetylase 1 
 hvu-r.1   123426647   histone deacetylase 9 
 hvu-r.1   123407335   histone deacetylase 1 
 hvu-r.1   123404168   probable histone deacetylase 19 
 sbi-r.1   8065038   probable histone deacetylase 19 
 sbi-r.1   8075265   histone deacetylase 9 
 sbi-r.1   8082952   probable histone deacetylase 19 
 bdi-r.1   100832825   histone deacetylase 9 
 bdi-r.1   100828770   histone deacetylase 1 
 bdi-r.1   100846111   probable histone deacetylase 19 
 cre-r.1   CHLRE_09g387393v5   uncharacterized protein 
 cre-r.1   CHLRE_06g277350v5   uncharacterized protein 
 cre-r.1   CHLRE_16g673150v5   uncharacterized protein 

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Top 50 coexpressed genes to HD1 (ath-m.4.hor coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to HD1 (ath-m.4.hor coexpression data)

CoexMap"829969"


athHD1 | Entrez gene ID : 829969      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 10 2 3 3 2 3 3 3 3 2 2 3 3 3 3 3 3 3 3
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03082 [list] [network] ATP-dependent chromatin remodeling (64 genes)
ath03083 [list] [network] Polycomb repressive complex (65 genes)
GO BP
GO:1902459 [list] [network] positive regulation of stem cell population maintenance  (2 genes)  IGI  
GO:1901001 [list] [network] negative regulation of response to salt stress  (14 genes)  IMP  
GO:0009861 [list] [network] jasmonic acid and ethylene-dependent systemic resistance  (18 genes)  IMP  
GO:0009294 [list] [network] DNA-mediated transformation  (26 genes)  IMP  
GO:0045892 [list] [network] negative regulation of DNA-templated transcription  (200 genes)  IDA IMP  
GO:0042742 [list] [network] defense response to bacterium  (363 genes)  IMP  
GO:2000026 [list] [network] regulation of multicellular organismal development  (421 genes)  IMP  
GO CC
GO:0070822 [list] [network] Sin3-type complex  (8 genes)  IDA  
GO:0000118 [list] [network] histone deacetylase complex  (44 genes)  IPI  
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO MF
GO:0004407 [list] [network] histone deacetylase activity  (17 genes)  IDA IMP ISS  
GO:0008270 [list] [network] zinc ion binding  (391 genes)  ISS  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001078511.1 [sequence] [blastp]
NP_195526.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 7,  cyto 1,  pero 1,  cysk 1,  cyto_E.R. 1,  cyto_plas 1  (predict for NP_001078511.1)
nucl 6,  cyto 2,  mito 1,  pero 1,  cysk 1  (predict for NP_195526.1)
Subcellular
localization
TargetP
other 9  (predict for NP_001078511.1)
other 9  (predict for NP_195526.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.hor
for
HD1
ath-u.5
for
HD1
ath-r.7
for
HD1
ath-m.9
for
HD1
ath-e.2
for
HD1
ath-m.4.bio
for
HD1
ath-m.4.lig
for
HD1
ath-m.4.str
for
HD1
ath-m.4.tis
for
HD1
ath-u.5
for
HDA9
bra-r.6
for
103873661
bra-r.6
for
HD1
bna-r.1
for
106365662
bna-r.1
for
106347665
bna-r.1
for
106445271
ghi-r.1
for
107908991
ghi-r.1
for
107928880
ghi-r.1
for
121214805
cit-r.1
for
102612639
cit-r.1
for
102626043
gma-u.5
for
HDA1
gma-u.5
for
HDA13
gma-u.5
for
HDA12
vvi-u.5
for
100240976
vvi-u.5
for
100248276
vvi-u.5
for
100244967
ppo-u.5
for
7490755
ppo-u.5
for
7496475
ppo-u.5
for
18098185
mtr-u.5
for
11446252
mtr-u.5
for
25494460
mtr-u.5
for
25490343
sly-u.5
for
HDA1
sly-u.5
for
101251648
sot-r.1
for
102606021
sot-r.1
for
102596222
nta-r.1
for
107779274
nta-r.1
for
107814744
nta-r.1
for
107823928
osa-u.5
for
4335765
osa-u.5
for
4328720
osa-u.5
for
4328717
zma-u.5
for
100193206
zma-u.5
for
541931
zma-u.5
for
541953
tae-r.2
for
123136961
tae-r.2
for
780688
tae-r.2
for
123169305
hvu-r.1
for
123426647
hvu-r.1
for
123407335
hvu-r.1
for
123404168
sbi-r.1
for
8065038
sbi-r.1
for
8075265
sbi-r.1
for
8082952
bdi-r.1
for
100832825
bdi-r.1
for
100828770
bdi-r.1
for
100846111
cre-r.1
for
CHLRE_09g387393v5
cre-r.1
for
CHLRE_06g277350v5
cre-r.1
for
CHLRE_16g673150v5


Ortholog ID: 1980
Species ath ath bra bra bna bna bna ghi ghi ghi cit cit gma gma gma vvi vvi vvi ppo ppo ppo mtr mtr mtr sly sly sot sot nta nta nta osa osa osa zma zma zma tae tae tae hvu hvu hvu sbi sbi sbi bdi bdi bdi cre cre cre
Symbol HD1 HDA9 LOC103873661 HD1 LOC106347665 LOC106445271 LOC106430324 LOC107928880 LOC121220865 LOC107900973 LOC102612639 LOC102626043 HDA1 HDA13 HDA9 LOC100240976 LOC100248276 LOC100241833 LOC7490755 LOC7496475 LOC18098185 LOC11446252 LOC25494460 LOC25490343 HDA1 LOC101251648 LOC102606021 LOC102596222 LOC107814744 LOC107823928 LOC107770761 LOC4328720 LOC4328717 LOC4341387 LOC100193206 LOC541931 LOC541953 LOC123169305 LOC123127307 LOC123045390 LOC123426647 LOC123407335 LOC123404168 LOC8065038 LOC8075265 LOC8082952 LOC100832825 LOC100828770 LOC100846111 CHLRE_09g387393v5 CHLRE_06g277350v5 CHLRE_16g673150v5
Function* histone deacetylase 1 histone deacetylase 9 histone deacetylase 9 histone deacetylase 19 histone deacetylase 9 histone deacetylase 19 histone deacetylase 9 histone deacetylase 19 histone deacetylase 9 histone deacetylase 19 histone deacetylase 9 histone deacetylase 19 histone deacetylase histone deacetylase histone deacetylase histone deacetylase 9 histone deacetylase 9 histone deacetylase 19 histone deacetylase 9 histone deacetylase 19 histone deacetylase 19 histone deacetylase 9 histone deacetylase 19 histone deacetylase 19 histone deacetylase 1 histone deacetylase 9 histone deacetylase 19 histone deacetylase 9 histone deacetylase 19 histone deacetylase 9 histone deacetylase 19-like histone deacetylase 2-like histone deacetylase 3-like histone deacetylase 1-like uncharacterized LOC100193206 histone deacetylase HDA101 histone deacetylase histone deacetylase 1 probable histone deacetylase 19 histone deacetylase 9 histone deacetylase 9 histone deacetylase 1 probable histone deacetylase 19 probable histone deacetylase 19 histone deacetylase 9 probable histone deacetylase 19 histone deacetylase 9 histone deacetylase 1 probable histone deacetylase 19 uncharacterized protein uncharacterized protein uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
ath03082 ATP-dependent chromatin remodeling 2
ath03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 3
bra03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 4
bna03420 Nucleotide excision repair 4
bna00480 Glutathione metabolism 3
bna03082 ATP-dependent chromatin remodeling 2
bna03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 4
bna03082 ATP-dependent chromatin remodeling 2
bna03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 4
bna03420 Nucleotide excision repair 4
bna03082 ATP-dependent chromatin remodeling 2
bna03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 6
ghi03082 ATP-dependent chromatin remodeling 4
ghi03083 Polycomb repressive complex 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03082 ATP-dependent chromatin remodeling 2
ghi03083 Polycomb repressive complex 2
ghi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 6
ghi03082 ATP-dependent chromatin remodeling 4
ghi03083 Polycomb repressive complex 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04016 MAPK signaling pathway - plant 2
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 2
gma03082 ATP-dependent chromatin remodeling 2
gma03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00340 Histidine metabolism 2
gma03082 ATP-dependent chromatin remodeling 2
gma03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00220 Arginine biosynthesis 2
gma00330 Arginine and proline metabolism 2
gma01230 Biosynthesis of amino acids 2
gma04148 Efferocytosis 2
gma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03022 Basal transcription factors 2
ppo03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00970 Aminoacyl-tRNA biosynthesis 2
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 3
mtr03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03013 Nucleocytoplasmic transport 4
mtr03082 ATP-dependent chromatin remodeling 3
mtr03040 Spliceosome 3
mtr03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03050 Proteasome 4
sly04120 Ubiquitin mediated proteolysis 2
sly04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04136 Autophagy - other 2
sly04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03050 Proteasome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03050 Proteasome 8
nta03082 ATP-dependent chromatin remodeling 2
nta03083 Polycomb repressive complex 2
nta00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00030 Pentose phosphate pathway 2
nta01200 Carbon metabolism 2
nta03050 Proteasome 2
nta03082 ATP-dependent chromatin remodeling 2
nta03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03050 Proteasome 8
nta03082 ATP-dependent chromatin remodeling 2
nta03083 Polycomb repressive complex 2
nta00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00280 Valine, leucine and isoleucine degradation 5
osa00310 Lysine degradation 3
osa00071 Fatty acid degradation 3
osa03082 ATP-dependent chromatin remodeling 2
osa03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04141 Protein processing in endoplasmic reticulum 7
osa03082 ATP-dependent chromatin remodeling 2
osa03083 Polycomb repressive complex 2
osa03040 Spliceosome 2
osa04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03050 Proteasome 6
zma03015 mRNA surveillance pathway 3
zma03420 Nucleotide excision repair 2
zma04141 Protein processing in endoplasmic reticulum 2
zma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03083 Polycomb repressive complex 4
tae04016 MAPK signaling pathway - plant 3
tae04626 Plant-pathogen interaction 3
tae03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03082 ATP-dependent chromatin remodeling 6
tae03083 Polycomb repressive complex 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 5
tae03082 ATP-dependent chromatin remodeling 3
tae03083 Polycomb repressive complex 3
tae03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04144 Endocytosis 3
hvu04120 Ubiquitin mediated proteolysis 2
hvu04130 SNARE interactions in vesicular transport 2
hvu04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04136 Autophagy - other 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04144 Endocytosis 4
bdi04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01200 Carbon metabolism 4
bdi00020 Citrate cycle (TCA cycle) 3
bdi01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 2
cre03082 ATP-dependent chromatin remodeling 2
cre03083 Polycomb repressive complex 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 829969 823594 103873661 103850038 106347665 106445271 106430324 107928880 121220865 107900973 102612639 102626043 100779296 100796727 100786705 100240976 100248276 100241833 7490755 7496475 18098185 11446252 25494460 25490343 101254943 101251648 102606021 102596222 107814744 107823928 107770761 4328720 4328717 4341387 100193206 541931 541953 123169305 123127307 123045390 123426647 123407335 123404168 8065038 8075265 8082952 100832825 100828770 100846111 5720565 5716284 5721417
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