ATTED-II : GeneCoexpression result

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-m.4.hor	PKS4	phytochrome kinase substrate 4
ath-u.5	PKS4	phytochrome kinase substrate 4
ath-r.7	PKS4	phytochrome kinase substrate 4
ath-m.9	PKS4	phytochrome kinase substrate 4
ath-e.2	PKS4	phytochrome kinase substrate 4
ath-m.4.bio	PKS4	phytochrome kinase substrate 4
ath-m.4.lig	PKS4	phytochrome kinase substrate 4
ath-m.4.str	PKS4	phytochrome kinase substrate 4
ath-m.4.tis	PKS4	phytochrome kinase substrate 4
ghi-r.1	107959501	protein PHYTOCHROME KINASE SUBSTRATE 4
cit-r.1	102610598	protein PHYTOCHROME KINASE SUBSTRATE 4
gma-u.5	100775429	protein PHYTOCHROME KINASE SUBSTRATE 4
gma-u.5	100804863	protein PHYTOCHROME KINASE SUBSTRATE 4
ppo-u.5	7456298	protein PHYTOCHROME KINASE SUBSTRATE 4
mtr-u.5	11436539	protein PHYTOCHROME KINASE SUBSTRATE 4
sly-u.5	101263562	protein PHYTOCHROME KINASE SUBSTRATE 4
sot-r.1	102601310	protein PHYTOCHROME KINASE SUBSTRATE 4
nta-r.1	107796286	protein PHYTOCHROME KINASE SUBSTRATE 4-like
nta-r.1	107784416	protein PHYTOCHROME KINASE SUBSTRATE 4-like
osa-u.5	9267758	protein PHYTOCHROME KINASE SUBSTRATE 4
hvu-r.1	123439775	protein PHYTOCHROME KINASE SUBSTRATE 4
bdi-r.1	100821486	protein PHYTOCHROME KINASE SUBSTRATE 4

Annotation

functional annotation

KEGG

GO BP

GO:0009638 [list] [network] phototropism	(26 genes)	IGI
GO:0010017 [list] [network] red or far-red light signaling pathway	(53 genes)	IMP
GO:0010218 [list] [network] response to far red light	(57 genes)	IEP
GO:0009611 [list] [network] response to wounding	(271 genes)	IEP

GO CC

GO:0005634 [list] [network] nucleus

(10367 genes)

ISM

GO MF

GO:0005515 [list] [network] protein binding

(5363 genes)

IPI

Protein

NP_196039.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 6, chlo 2, cyto 1

(predict for NP_196039.1)

Subcellular
localization
TargetP

other 8

(predict for NP_196039.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.4.hor for PKS4	ath-u.5 for PKS4	ath-r.7 for PKS4	ath-m.9 for PKS4	ath-e.2 for PKS4	ath-m.4.bio for PKS4	ath-m.4.lig for PKS4	ath-m.4.str for PKS4	ath-m.4.tis for PKS4	ghi-r.1 for 107959501	cit-r.1 for 102610598	gma-u.5 for 100775429	gma-u.5 for 100804863	ppo-u.5 for 7456298	mtr-u.5 for 11436539	sly-u.5 for 101263562	sot-r.1 for 102601310	nta-r.1 for 107796286	nta-r.1 for 107784416	osa-u.5 for 9267758	hvu-r.1 for 123439775	bdi-r.1 for 100821486

Ortholog

Ortholog ID: 9070

Species

ath

ghi

cit

gma

ppo

mtr

sly

sot

nta

osa

hvu

bdi

Symbol

PKS4

Function^*

phytochrome kinase substrate 4

protein PHYTOCHROME KINASE SUBSTRATE 4

protein PHYTOCHROME KINASE SUBSTRATE 4-like

protein PHYTOCHROME KINASE SUBSTRATE 4

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04075	Plant hormone signal transduction	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00500	Starch and sucrose metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04712	Circadian rhythm - plant	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00040	Pentose and glucuronate interconversions	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04145	Phagosome	6
sot04517	IgSF CAM signaling	6
sot04814	Motor proteins	6
sot00053	Ascorbate and aldarate metabolism	4
sot00520	Amino sugar and nucleotide sugar metabolism	4