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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.hor   EMF2   VEFS-Box of polycomb protein 
 ath-u.5   EMF2   VEFS-Box of polycomb protein 
 ath-r.7   EMF2   VEFS-Box of polycomb protein 
 ath-m.9   EMF2   VEFS-Box of polycomb protein 
 ath-e.2   EMF2   VEFS-Box of polycomb protein 
 ath-m.4.bio   EMF2   VEFS-Box of polycomb protein 
 ath-m.4.lig   EMF2   VEFS-Box of polycomb protein 
 ath-m.4.str   EMF2   VEFS-Box of polycomb protein 
 ath-m.4.tis   EMF2   VEFS-Box of polycomb protein 
 ath-u.5   VRN2   VEFS-Box of polycomb protein 
 bra-r.6   103833983   polycomb group protein VERNALIZATION 2 
 bra-r.6   103838272   uncharacterized LOC103838272 
 bra-r.6   103844380   polycomb group protein EMBRYONIC FLOWER 2 
 bna-r.1   106360693   polycomb group protein VERNALIZATION 2-like 
 ghi-r.1   107953615   polycomb group protein EMBRYONIC FLOWER 2 
 ghi-r.1   107947336   polycomb group protein EMBRYONIC FLOWER 2 
 ghi-r.1   107933743   polycomb group protein EMBRYONIC FLOWER 2 
 cit-r.1   102627407   polycomb group protein EMBRYONIC FLOWER 2 
 cit-r.1   102611081   polycomb group protein EMBRYONIC FLOWER 2 
 gma-u.5   100798991   polycomb group protein EMBRYONIC FLOWER 2 
 gma-u.5   100815591   polycomb group protein EMBRYONIC FLOWER 2 
 vvi-u.5   100252876   polycomb group protein EMBRYONIC FLOWER 2 
 vvi-u.5   100245153   polycomb group protein EMBRYONIC FLOWER 2 
 ppo-u.5   18097071   polycomb group protein EMBRYONIC FLOWER 2 
 ppo-u.5   7491491   polycomb group protein EMBRYONIC FLOWER 2 
 ppo-u.5   7461995   polycomb group protein EMBRYONIC FLOWER 2 
 mtr-u.5   11409082   polycomb group protein EMBRYONIC FLOWER 2 
 mtr-u.5   11438436   polycomb group protein EMF2B 
 sly-u.5   EMF2   polycomb group protein EMBRYONIC FLOWER 2 
 sot-r.1   102603577   polycomb group protein EMBRYONIC FLOWER 2 
 nta-r.1   107762027   polycomb group protein EMBRYONIC FLOWER 2 
 nta-r.1   107829159   polycomb group protein EMBRYONIC FLOWER 2-like 
 nta-r.1   107804934   polycomb group protein EMBRYONIC FLOWER 2 
 osa-u.5   4335036   polycomb group protein EMF2A-like 
 osa-u.5   4346674   polycomb group protein EMF2B-like 
 zma-u.5   542512   VEF family protein 
 zma-u.5   100274131   uncharacterized LOC100274131 
 tae-r.2   123111672   polycomb group protein EMF2B 
 tae-r.2   123121170   polycomb group protein EMF2B 
 hvu-r.1   123431440   polycomb group protein EMF2B-like 
 hvu-r.1   123431452   polycomb group protein EMF2B-like 
 hvu-r.1   123452872   polycomb group protein EMF2B-like 
 sbi-r.1   8086238   polycomb group protein EMBRYONIC FLOWER 2 
 sbi-r.1   110432499   polycomb group protein EMBRYONIC FLOWER 2-like 
 sbi-r.1   8066000   polycomb group protein EMBRYONIC FLOWER 2 
 bdi-r.1   100830135   polycomb group protein EMBRYONIC FLOWER 2 
 bdi-r.1   100829017   polycomb group protein EMBRYONIC FLOWER 2 
 cre-r.1   CHLRE_10g456800v5   uncharacterized protein 
 cre-r.1   CHLRE_16g695400v5   uncharacterized protein 

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Top 50 coexpressed genes to EMF2 (ath-m.4.hor coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to EMF2 (ath-m.4.hor coexpression data)

CoexMap"835198"


athEMF2 | Entrez gene ID : 835198      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 10 3 1 3 2 2 2 3 2 1 1 3 2 2 2 3 3 2 2
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0141044 [list] [network] epigenetic programming in the endosperm  (8 genes)  IMP  
GO:0009910 [list] [network] negative regulation of flower development  (50 genes)  IMP  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM ISS  
GO MF
GO:0001222 [list] [network] transcription corepressor binding  (13 genes)  IPI  
GO:0000976 [list] [network] transcription cis-regulatory region binding  (716 genes)  IPI  
GO:0003677 [list] [network] DNA binding  (1274 genes)  ISS  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1620 genes)  ISS  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001119413.1 [sequence] [blastp]
NP_199936.2 [sequence] [blastp]
NP_851168.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for NP_001119413.1)
nucl 10  (predict for NP_199936.2)
nucl 10  (predict for NP_851168.1)
Subcellular
localization
TargetP
chlo 4,  other 4  (predict for NP_001119413.1)
chlo 4,  other 4  (predict for NP_199936.2)
chlo 4,  other 4  (predict for NP_851168.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.hor
for
EMF2
ath-u.5
for
EMF2
ath-r.7
for
EMF2
ath-m.9
for
EMF2
ath-e.2
for
EMF2
ath-m.4.bio
for
EMF2
ath-m.4.lig
for
EMF2
ath-m.4.str
for
EMF2
ath-m.4.tis
for
EMF2
ath-u.5
for
VRN2
bra-r.6
for
103833983
bra-r.6
for
103838272
bra-r.6
for
103844380
bna-r.1
for
106360693
ghi-r.1
for
107953615
ghi-r.1
for
107947336
ghi-r.1
for
107933743
cit-r.1
for
102627407
cit-r.1
for
102611081
gma-u.5
for
100798991
gma-u.5
for
100815591
vvi-u.5
for
100252876
vvi-u.5
for
100245153
ppo-u.5
for
18097071
ppo-u.5
for
7491491
ppo-u.5
for
7461995
mtr-u.5
for
11409082
mtr-u.5
for
11438436
sly-u.5
for
EMF2
sot-r.1
for
102603577
nta-r.1
for
107762027
nta-r.1
for
107829159
nta-r.1
for
107804934
osa-u.5
for
4335036
osa-u.5
for
4346674
zma-u.5
for
542512
zma-u.5
for
100274131
tae-r.2
for
123111672
tae-r.2
for
123121170
hvu-r.1
for
123431440
hvu-r.1
for
123431452
hvu-r.1
for
123452872
sbi-r.1
for
8086238
sbi-r.1
for
110432499
sbi-r.1
for
8066000
bdi-r.1
for
100830135
bdi-r.1
for
100829017
cre-r.1
for
CHLRE_10g456800v5
cre-r.1
for
CHLRE_16g695400v5


Ortholog ID: 1339
Species ath ath bra bra bra bna bna ghi ghi ghi cit cit gma gma vvi vvi ppo ppo ppo mtr mtr sly sot nta nta nta osa osa zma zma tae hvu hvu hvu sbi sbi sbi bdi bdi cre cre
Symbol EMF2 VRN2 LOC103838272 LOC103844380 LOC103844382 LOC125585430 LOC106406417 LOC107947336 LOC107933743 LOC107949681 LOC102627407 LOC102611081 LOC100798991 LOC100816782 LOC100252876 LOC100245153 LOC18097071 LOC7491491 LOC7461995 LOC11409082 LOC11438436 EMF2 LOC102603577 LOC107762027 LOC107804934 LOC107788047 LOC4335036 LOC4346674 LOC542512 LOC100274131 LOC123121170 LOC123431440 LOC123431452 LOC123452872 LOC8086238 LOC110432499 LOC8066000 LOC100830135 LOC100829017 CHLRE_10g456800v5 CHLRE_16g695400v5
Function* VEFS-Box of polycomb protein VEFS-Box of polycomb protein uncharacterized LOC103838272 polycomb group protein EMBRYONIC FLOWER 2 polycomb group protein EMBRYONIC FLOWER 2 polycomb group protein EMBRYONIC FLOWER 2-like polycomb group protein EMBRYONIC FLOWER 2 polycomb group protein EMBRYONIC FLOWER 2 polycomb group protein EMBRYONIC FLOWER 2 polycomb group protein EMBRYONIC FLOWER 2 polycomb group protein EMBRYONIC FLOWER 2 polycomb group protein EMBRYONIC FLOWER 2 polycomb group protein EMBRYONIC FLOWER 2 polycomb group protein EMBRYONIC FLOWER 2 polycomb group protein EMBRYONIC FLOWER 2 polycomb group protein EMBRYONIC FLOWER 2 polycomb group protein EMBRYONIC FLOWER 2 polycomb group protein EMBRYONIC FLOWER 2 polycomb group protein EMBRYONIC FLOWER 2 polycomb group protein EMBRYONIC FLOWER 2 polycomb group protein EMF2B polycomb group protein EMBRYONIC FLOWER 2 polycomb group protein EMBRYONIC FLOWER 2 polycomb group protein EMBRYONIC FLOWER 2 polycomb group protein EMBRYONIC FLOWER 2 polycomb group protein EMBRYONIC FLOWER 2 polycomb group protein EMF2A-like polycomb group protein EMF2B-like VEF family protein uncharacterized LOC100274131 polycomb group protein EMF2B polycomb group protein EMF2B-like polycomb group protein EMF2B-like polycomb group protein EMF2B-like polycomb group protein EMBRYONIC FLOWER 2 polycomb group protein EMBRYONIC FLOWER 2-like polycomb group protein EMBRYONIC FLOWER 2 polycomb group protein EMBRYONIC FLOWER 2 polycomb group protein EMBRYONIC FLOWER 2 uncharacterized protein uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 4
ath03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
bra03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 6
bna04382 Cornified envelope formation 4
bna03440 Homologous recombination 2
bna03015 mRNA surveillance pathway 2
bna00511 Other glycan degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04382 Cornified envelope formation 4
bna03015 mRNA surveillance pathway 2
bna00511 Other glycan degradation 2
bna00600 Sphingolipid metabolism 2
bna04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 6
ghi03022 Basal transcription factors 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04148 Efferocytosis 2
ghi03022 Basal transcription factors 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03440 Homologous recombination 3
vvi01240 Biosynthesis of cofactors 2
vvi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04144 Endocytosis 3
ppo04142 Lysosome 2
ppo05100 Bacterial invasion of epithelial cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04141 Protein processing in endoplasmic reticulum 3
mtr03040 Spliceosome 3
mtr04120 Ubiquitin mediated proteolysis 2
mtr03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03015 mRNA surveillance pathway 2
sly04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04144 Endocytosis 2
sot03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00280 Valine, leucine and isoleucine degradation 2
nta00410 beta-Alanine metabolism 2
nta00562 Inositol phosphate metabolism 2
nta00640 Propanoate metabolism 2
nta01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 5
zma03015 mRNA surveillance pathway 2
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 3
hvu03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
hvu03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03030 DNA replication 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 835198 827392 103838272 103844380 103844382 125585430 106406417 107947336 107933743 107949681 102627407 102611081 100798991 100816782 100252876 100245153 18097071 7491491 7461995 11409082 11438436 100134887 102603577 107762027 107804934 107788047 4335036 4346674 542512 100274131 123121170 123431440 123431452 123452872 8086238 110432499 8066000 100830135 100829017 66055120 66056855
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