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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.hor   SHOC1   shortage in chiasmata 1 
 ath-m.9   SHOC1   shortage in chiasmata 1 
 ath-m.4.bio   SHOC1   shortage in chiasmata 1 
 ath-m.4.lig   SHOC1   shortage in chiasmata 1 
 ath-m.4.str   SHOC1   shortage in chiasmata 1 
 ath-m.4.tis   SHOC1   shortage in chiasmata 1 
 bra-r.6   103857134   protein SHORTAGE IN CHIASMATA 1 
 bna-r.1   111204379   protein SHORTAGE IN CHIASMATA 1-like 
 bna-r.1   106387959   protein SHORTAGE IN CHIASMATA 1 
 ghi-r.1   107943477   protein SHORTAGE IN CHIASMATA 1 
 ghi-r.1   107936874   protein SHORTAGE IN CHIASMATA 1-like 
 cit-r.1   102610530   protein SHORTAGE IN CHIASMATA 1 
 gma-u.5   102663374   protein SHORTAGE IN CHIASMATA 1 
 vvi-u.5   104882205   protein SHORTAGE IN CHIASMATA 1 
 sly-u.5   101266605   protein SHORTAGE IN CHIASMATA 1 
 sot-r.1   102597001   uncharacterized LOC102597001 
 nta-r.1   107782724   protein SHORTAGE IN CHIASMATA 1 
 nta-r.1   107781840   protein SHORTAGE IN CHIASMATA 1 
 nta-r.1   142181795   protein SHORTAGE IN CHIASMATA 1-like 
 osa-u.5   4330127   protein SHORTAGE IN CHIASMATA 1 
 zma-u.5   103627474   uncharacterized LOC103627474 
 tae-r.2   123091413   protein SHORTAGE IN CHIASMATA 1 homolog 
 tae-r.2   123144940   protein SHORTAGE IN CHIASMATA 1 homolog 
 tae-r.2   123096377   protein SHORTAGE IN CHIASMATA 1 homolog 
 hvu-r.1   123403914   protein SHORTAGE IN CHIASMATA 1 homolog 
 sbi-r.1   8078888   protein SHORTAGE IN CHIASMATA 1 
 bdi-r.1   100830939   protein SHORTAGE IN CHIASMATA 1 

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Top 50 coexpressed genes to SHOC1 (ath-m.4.hor coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to SHOC1 (ath-m.4.hor coexpression data)

CoexMap"835305"


athSHOC1 | Entrez gene ID : 835305      
Species ath bra bna ghi cit gma vvi sly sot nta osa zma tae hvu sbi bdi mtr cre ppo
Paralog 6 1 2 2 1 1 1 1 1 3 1 1 3 1 1 1 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000712 [list] [network] resolution of meiotic recombination intermediates  (6 genes)  IMP  
GO CC
GO:0009506 [list] [network] plasmodesma  (874 genes)  HDA  
GO MF
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_200042.4 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  chlo 4,  cyto 1,  mito 1,  cysk 1  (predict for NP_200042.4)
Subcellular
localization
TargetP
other 5,  mito 3  (predict for NP_200042.4)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.hor
for
SHOC1
ath-m.9
for
SHOC1
ath-m.4.bio
for
SHOC1
ath-m.4.lig
for
SHOC1
ath-m.4.str
for
SHOC1
ath-m.4.tis
for
SHOC1
bra-r.6
for
103857134
bna-r.1
for
111204379
bna-r.1
for
106387959
ghi-r.1
for
107943477
ghi-r.1
for
107936874
cit-r.1
for
102610530
gma-u.5
for
102663374
vvi-u.5
for
104882205
sly-u.5
for
101266605
sot-r.1
for
102597001
nta-r.1
for
107782724
nta-r.1
for
107781840
nta-r.1
for
142181795
osa-u.5
for
4330127
zma-u.5
for
103627474
tae-r.2
for
123091413
tae-r.2
for
123144940
tae-r.2
for
123096377
hvu-r.1
for
123403914
sbi-r.1
for
8078888
bdi-r.1
for
100830939


Ortholog ID: 8195
Species bra bna bna ghi ghi cit gma vvi sly sot nta nta nta osa zma tae tae tae hvu sbi bdi
Symbol LOC103857134 LOC111204379 LOC106387959 LOC107943477 LOC107936874 LOC102610530 LOC102663374 LOC104882205 LOC101266605 LOC102597001 LOC107782724 LOC107781840 LOC142181795 LOC4330127 LOC103627474 LOC123096377 LOC123127844 LOC123137609 LOC123403914 LOC8078888 LOC100830939
Function* protein SHORTAGE IN CHIASMATA 1 protein SHORTAGE IN CHIASMATA 1-like protein SHORTAGE IN CHIASMATA 1 protein SHORTAGE IN CHIASMATA 1 protein SHORTAGE IN CHIASMATA 1-like protein SHORTAGE IN CHIASMATA 1 protein SHORTAGE IN CHIASMATA 1 protein SHORTAGE IN CHIASMATA 1 protein SHORTAGE IN CHIASMATA 1 uncharacterized LOC102597001 protein SHORTAGE IN CHIASMATA 1 protein SHORTAGE IN CHIASMATA 1 protein SHORTAGE IN CHIASMATA 1-like protein SHORTAGE IN CHIASMATA 1 uncharacterized LOC103627474 protein SHORTAGE IN CHIASMATA 1 homolog protein SHORTAGE IN CHIASMATA 1 homolog protein SHORTAGE IN CHIASMATA 1 homolog protein SHORTAGE IN CHIASMATA 1 homolog protein SHORTAGE IN CHIASMATA 1 protein SHORTAGE IN CHIASMATA 1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03013 Nucleocytoplasmic transport 2
bra03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04814 Motor proteins 9
bna03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04814 Motor proteins 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04814 Motor proteins 7
gma00270 Cysteine and methionine metabolism 2
gma00280 Valine, leucine and isoleucine degradation 2
gma00290 Valine, leucine and isoleucine biosynthesis 2
gma00770 Pantothenate and CoA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00970 Aminoacyl-tRNA biosynthesis 3
vvi00940 Phenylpropanoid biosynthesis 2
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03460 Fanconi anemia pathway 5
sly03440 Homologous recombination 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 2
nta04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00561 Glycerolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 4
nta04382 Cornified envelope formation 4
nta04142 Lysosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03030 DNA replication 6
zma04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04814 Motor proteins 6
tae03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04814 Motor proteins 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04814 Motor proteins 6
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 103857134 111204379 106387959 107943477 107936874 102610530 102663374 104882205 101266605 102597001 107782724 107781840 142181795 4330127 103627474 123096377 123127844 123137609 123403914 8078888 100830939
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