ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-m.4.hor	ZTL	Galactose oxidase/kelch repeat superfamily protein
ath-u.5	ZTL	Galactose oxidase/kelch repeat superfamily protein
ath-r.7	ZTL	Galactose oxidase/kelch repeat superfamily protein
ath-m.9	ZTL	Galactose oxidase/kelch repeat superfamily protein
ath-e.2	ZTL	Galactose oxidase/kelch repeat superfamily protein
ath-m.4.bio	ZTL	Galactose oxidase/kelch repeat superfamily protein
ath-m.4.lig	ZTL	Galactose oxidase/kelch repeat superfamily protein
ath-m.4.str	ZTL	Galactose oxidase/kelch repeat superfamily protein
ath-m.4.tis	ZTL	Galactose oxidase/kelch repeat superfamily protein
ath-u.5	LKP2	LOV KELCH protein 2
ath-u.5	FKF1	flavin-binding, kelch repeat, f box 1
bra-r.6	103828356	adagio protein 2
bra-r.6	103828355	adagio protein 2
bra-r.6	103828354	adagio protein 2
bna-r.1	106435341	adagio protein 2
bna-r.1	106357634	adagio protein 2-like
bna-r.1	106433001	adagio protein 2-like
ghi-r.1	107907349	adagio protein 1
ghi-r.1	107907495	adagio protein 1
ghi-r.1	107918113	adagio protein 3
cit-r.1	102630709	adagio protein 3
cit-r.1	102613944	adagio protein 1
gma-u.5	ZTL2	clock-associated PAS protein ZEITLUPE 2
gma-u.5	ZTL1	PAS protein ZEITLUPE 1
gma-u.5	ZTL	adagio protein 1
vvi-u.5	100249144	adagio protein 1
vvi-u.5	100255972	adagio protein 3
vvi-u.5	100244508	adagio protein 1
ppo-u.5	18100482	adagio protein 1
ppo-u.5	7488958	adagio protein 1
ppo-u.5	7482913	adagio protein 3
mtr-u.5	11417024	adagio protein 3
mtr-u.5	11445386	adagio protein 1
sly-u.5	101256908	adagio protein 3
sly-u.5	101262932	adagio protein 1
sot-r.1	102593553	adagio protein 3
sot-r.1	102583269	adagio protein 1-like
nta-r.1	107775221	adagio protein 1
nta-r.1	107786372	adagio protein 1
nta-r.1	107774540	adagio protein 3
osa-u.5	4350698	adagio-like protein 3
osa-u.5	4341923	adagio-like protein 1
osa-u.5	4328313	putative adagio-like protein 2
zma-u.5	100383277	uncharacterized LOC100383277
zma-u.5	100279726	Adagio protein 3
zma-u.5	103629610	adagio-like protein 1
tae-r.2	123132267	putative adagio-like protein 2
tae-r.2	123143828	putative adagio-like protein 2
tae-r.2	123148788	adagio-like protein 1
hvu-r.1	123406339	putative adagio-like protein 2
hvu-r.1	123448527	adagio-like protein 3
hvu-r.1	123407075	adagio-like protein 1
sbi-r.1	8057016	adagio-like protein 3
sbi-r.1	8074643	putative adagio-like protein 2
sbi-r.1	8065120	adagio-like protein 1
bdi-r.1	100832311	adagio-like protein 1
bdi-r.1	100845844	adagio-like protein 3
bdi-r.1	100836271	putative adagio-like protein 2

Top 50 coexpressed genes to ZTL (ath-m.4.hor coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to ZTL (ath-m.4.hor coexpression data)

CoexMap"835842"

[Cytoscape]

Annotation

functional annotation

KEGG

ath04712 [list] [network] Circadian rhythm - plant (43 genes)

GO BP

GO:0043153 [list] [network] entrainment of circadian clock by photoperiod	(3 genes)	IMP
GO:0031146 [list] [network] SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	(7 genes)	IC
GO:0010498 [list] [network] proteasomal protein catabolic process	(49 genes)	IMP
GO:0042752 [list] [network] regulation of circadian rhythm	(59 genes)	IMP
GO:0010114 [list] [network] response to red light	(73 genes)	IMP
GO:0007623 [list] [network] circadian rhythm	(124 genes)	IMP TAS
GO:0006511 [list] [network] ubiquitin-dependent protein catabolic process	(219 genes)	TAS
GO:0009908 [list] [network] flower development	(378 genes)	IMP

GO CC

GO:0019005 [list] [network] SCF ubiquitin ligase complex	(41 genes)	IPI
GO:0005829 [list] [network] cytosol	(2593 genes)	IDA
GO:0005634 [list] [network] nucleus	(10367 genes)	IDA ISM TAS

GO MF

GO:0009882 [list] [network] blue light photoreceptor activity	(5 genes)	IDA
GO:0005515 [list] [network] protein binding	(5363 genes)	IPI

Protein

NP_001154783.1 [sequence] [blastp]
NP_568855.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 4, cyto_nucl 4, cyto 2, E.R. 1, chlo 1, plas 1, vacu 1	(predict for NP_001154783.1)
nucl 7, cyto_nucl 4, cyto 1	(predict for NP_568855.1)

Subcellular
localization
TargetP

other 9	(predict for NP_001154783.1)
other 9	(predict for NP_568855.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.4.hor for ZTL	ath-u.5 for ZTL	ath-r.7 for ZTL	ath-m.9 for ZTL	ath-e.2 for ZTL	ath-m.4.bio for ZTL	ath-m.4.lig for ZTL	ath-m.4.str for ZTL	ath-m.4.tis for ZTL	ath-u.5 for LKP2	ath-u.5 for FKF1	bra-r.6 for 103828356	bra-r.6 for 103828355	bra-r.6 for 103828354	bna-r.1 for 106435341	bna-r.1 for 106357634	bna-r.1 for 106433001	ghi-r.1 for 107907349	ghi-r.1 for 107907495	ghi-r.1 for 107918113	cit-r.1 for 102630709	cit-r.1 for 102613944	gma-u.5 for ZTL2	gma-u.5 for ZTL1	gma-u.5 for ZTL	vvi-u.5 for 100249144	vvi-u.5 for 100255972	vvi-u.5 for 100244508	ppo-u.5 for 18100482	ppo-u.5 for 7488958	ppo-u.5 for 7482913	mtr-u.5 for 11417024	mtr-u.5 for 11445386	sly-u.5 for 101256908	sly-u.5 for 101262932	sot-r.1 for 102593553	sot-r.1 for 102583269	nta-r.1 for 107775221	nta-r.1 for 107786372	nta-r.1 for 107774540	osa-u.5 for 4350698	osa-u.5 for 4341923	osa-u.5 for 4328313	zma-u.5 for 100383277	zma-u.5 for 100279726	zma-u.5 for 103629610	tae-r.2 for 123132267	tae-r.2 for 123143828	tae-r.2 for 123148788	hvu-r.1 for 123406339	hvu-r.1 for 123448527	hvu-r.1 for 123407075	sbi-r.1 for 8057016	sbi-r.1 for 8074643	sbi-r.1 for 8065120	bdi-r.1 for 100832311	bdi-r.1 for 100845844	bdi-r.1 for 100836271

Ortholog

Ortholog ID: 2012

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

ZTL

LKP2

FKF1

ZTL2

ZTL1

ZTL

Function^*

Galactose oxidase/kelch repeat superfamily protein

LOV KELCH protein 2

flavin-binding, kelch repeat, f box 1

adagio protein 2

adagio protein 2-like

adagio protein 1

adagio protein 3

adagio protein 1

clock-associated PAS protein ZEITLUPE 2

PAS protein ZEITLUPE 1

adagio protein 1

adagio protein 3

adagio protein 1

adagio protein 3

adagio protein 1

adagio protein 3

adagio protein 1

adagio protein 3

adagio protein 1-like

adagio protein 1

adagio protein 3

adagio-like protein 3

adagio-like protein 1