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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.hor   AT5G60590   DHBP synthase RibB-like alpha/beta domain-containing protein 
 ath-u.5   AT5G60590   DHBP synthase RibB-like alpha/beta domain-containing protein 
 ath-r.7   AT5G60590   DHBP synthase RibB-like alpha/beta domain-containing protein 
 ath-m.9   AT5G60590   DHBP synthase RibB-like alpha/beta domain-containing protein 
 ath-e.2   AT5G60590   DHBP synthase RibB-like alpha/beta domain-containing protein 
 ath-m.4.bio   AT5G60590   DHBP synthase RibB-like alpha/beta domain-containing protein 
 ath-m.4.lig   AT5G60590   DHBP synthase RibB-like alpha/beta domain-containing protein 
 ath-m.4.str   AT5G60590   DHBP synthase RibB-like alpha/beta domain-containing protein 
 ath-m.4.tis   AT5G60590   DHBP synthase RibB-like alpha/beta domain-containing protein 
 bra-r.6   103845474   yrdC domain-containing protein, mitochondrial 
 bna-r.1   106370392   threonylcarbamoyl-AMP synthase 
 bna-r.1   106365751   threonylcarbamoyl-AMP synthase 
 ghi-r.1   107936069   yrdC domain-containing protein, mitochondrial 
 ghi-r.1   107930504   yrdC domain-containing protein, mitochondrial 
 cit-r.1   102630893   uncharacterized LOC102630893 
 gma-u.5   100777085   yrdC domain-containing protein, mitochondrial 
 gma-u.5   100791087   yrdC domain-containing protein, mitochondrial 
 vvi-u.5   100251962   uncharacterized LOC100251962 
 ppo-u.5   7488149   uncharacterized LOC7488149 
 mtr-u.5   25494422   yrdC domain-containing protein, mitochondrial 
 sly-u.5   101257041   uncharacterized LOC101257041 
 sot-r.1   102578483   yrdC domain-containing protein, mitochondrial 
 nta-r.1   142161928   uncharacterized LOC142161928 
 nta-r.1   107769886   uncharacterized LOC107769886 
 nta-r.1   107795286   uncharacterized LOC107795286 
 osa-u.5   4331975   uncharacterized LOC4331975 
 zma-u.5   100282574   ischemia/reperfusion inducible protein 
 tae-r.2   123084985   yrdC domain-containing protein, mitochondrial 
 tae-r.2   123093080   yrdC domain-containing protein, mitochondrial 
 tae-r.2   123098365   yrdC domain-containing protein, mitochondrial 
 hvu-r.1   123449405   yrdC domain-containing protein, mitochondrial 
 sbi-r.1   8054234   yrdC domain-containing protein, mitochondrial 
 bdi-r.1   100836001   yrdC domain-containing protein, mitochondrial 
 cre-r.1   CHLRE_05g234657v5   uncharacterized protein 

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Top 50 coexpressed genes to AT5G60590 (ath-m.4.hor coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT5G60590 (ath-m.4.hor coexpression data)

CoexMap"836180"


athAT5G60590 | Entrez gene ID : 836180      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 2 1 2 1 1 1 1 1 3 1 1 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0009507 [list] [network] chloroplast  (5014 genes)  ISM  
GO MF
Protein NP_001331058.1 [sequence] [blastp]
NP_568924.1 [sequence] [blastp]
NP_974970.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  nucl 1,  cyto 1,  vacu 1,  cyto_nucl 1  (predict for NP_001331058.1)
chlo 7,  vacu 1,  nucl 1,  cyto 1,  cyto_nucl 1,  E.R._vacu 1  (predict for NP_568924.1)
chlo 8,  vacu 1  (predict for NP_974970.1)
Subcellular
localization
TargetP
chlo 7  (predict for NP_001331058.1)
chlo 7  (predict for NP_568924.1)
chlo 7  (predict for NP_974970.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.hor
for
AT5G60590
ath-u.5
for
AT5G60590
ath-r.7
for
AT5G60590
ath-m.9
for
AT5G60590
ath-e.2
for
AT5G60590
ath-m.4.bio
for
AT5G60590
ath-m.4.lig
for
AT5G60590
ath-m.4.str
for
AT5G60590
ath-m.4.tis
for
AT5G60590
bra-r.6
for
103845474
bna-r.1
for
106370392
bna-r.1
for
106365751
ghi-r.1
for
107936069
ghi-r.1
for
107930504
cit-r.1
for
102630893
gma-u.5
for
100777085
gma-u.5
for
100791087
vvi-u.5
for
100251962
ppo-u.5
for
7488149
mtr-u.5
for
25494422
sly-u.5
for
101257041
sot-r.1
for
102578483
nta-r.1
for
142161928
nta-r.1
for
107769886
nta-r.1
for
107795286
osa-u.5
for
4331975
zma-u.5
for
100282574
tae-r.2
for
123084985
tae-r.2
for
123093080
tae-r.2
for
123098365
hvu-r.1
for
123449405
sbi-r.1
for
8054234
bdi-r.1
for
100836001
cre-r.1
for
CHLRE_05g234657v5


Ortholog ID: 8206
Species ath bra bna bna ghi ghi cit gma gma vvi ppo mtr sly sot nta nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol AT5G60590 LOC103845474 LOC106370392 LOC106365751 LOC107936069 LOC107930504 LOC102630893 LOC100777085 LOC100791087 LOC100251962 LOC7488149 LOC25494422 LOC101257041 LOC102578483 LOC142161928 LOC107769886 LOC107795283 LOC4331975 LOC100282574 LOC123084985 LOC123093080 LOC123098365 LOC123449405 LOC8054234 LOC100836001 CHLRE_05g234657v5
Function* DHBP synthase RibB-like alpha/beta domain-containing protein yrdC domain-containing protein, mitochondrial threonylcarbamoyl-AMP synthase threonylcarbamoyl-AMP synthase yrdC domain-containing protein, mitochondrial yrdC domain-containing protein, mitochondrial uncharacterized LOC102630893 yrdC domain-containing protein, mitochondrial yrdC domain-containing protein, mitochondrial uncharacterized LOC100251962 uncharacterized LOC7488149 yrdC domain-containing protein, mitochondrial uncharacterized LOC101257041 yrdC domain-containing protein, mitochondrial uncharacterized LOC142161928 uncharacterized LOC107769886 uncharacterized LOC107795283 uncharacterized LOC4331975 ischemia/reperfusion inducible protein yrdC domain-containing protein, mitochondrial yrdC domain-containing protein, mitochondrial yrdC domain-containing protein, mitochondrial yrdC domain-containing protein, mitochondrial yrdC domain-containing protein, mitochondrial yrdC domain-containing protein, mitochondrial uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 5
bra03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 3
bna03410 Base excision repair 3
bna03420 Nucleotide excision repair 3
bna03440 Homologous recombination 3
bna00740 Riboflavin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 3
bna03410 Base excision repair 3
bna03420 Nucleotide excision repair 3
bna03440 Homologous recombination 3
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00280 Valine, leucine and isoleucine degradation 2
gma00410 beta-Alanine metabolism 2
gma00640 Propanoate metabolism 2
gma01200 Carbon metabolism 2
gma03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 8
gma00780 Biotin metabolism 2
gma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00062 Fatty acid elongation 3
ppo01040 Biosynthesis of unsaturated fatty acids 3
ppo01212 Fatty acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00280 Valine, leucine and isoleucine degradation 3
mtr00520 Amino sugar and nucleotide sugar metabolism 2
mtr01250 Biosynthesis of nucleotide sugars 2
mtr04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 3
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 3
sot03013 Nucleocytoplasmic transport 2
sot03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 3
tae00030 Pentose phosphate pathway 3
tae00230 Purine metabolism 3
tae01200 Carbon metabolism 3
tae01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03020 RNA polymerase 2
hvu03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 836180 103845474 106370392 106365751 107936069 107930504 102630893 100777085 100791087 100251962 7488149 25494422 101257041 102578483 142161928 107769886 107795283 4331975 100282574 123084985 123093080 123098365 123449405 8054234 100836001 5726194
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