ATTED-II : GeneCoexpression result

Species	Gene	Description
ath-m.4.hor	SDS	Cyclin family protein
ath-m.9	SDS	Cyclin family protein
ath-m.4.bio	SDS	Cyclin family protein
ath-m.4.lig	SDS	Cyclin family protein
ath-m.4.str	SDS	Cyclin family protein
ath-m.4.tis	SDS	Cyclin family protein
bra-r.6	103872270	cyclin-SDS
bra-r.6	103842946	cyclin-SDS-like
ghi-r.1	107943673	cyclin-SDS
ghi-r.1	107938726	cyclin-SDS
sot-r.1	102605664	cyclin-SDS
osa-u.5	4332116	cyclin-SDS-like
zma-u.5	100283361	cyclin, N-terminal domain containing protein
zma-u.5	103633005	cyclin-SDS-like
tae-r.2	123098187	cyclin-SDS-like
bdi-r.1	100837451	cyclin-SDS-like

functional annotation

KEGG

GO BP

GO:0051026 [list] [network] chiasma assembly	(16 genes)	IMP
GO:0000724 [list] [network] double-strand break repair via homologous recombination	(43 genes)	IMP

GO CC

GO:0005634 [list] [network] nucleus

(10367 genes)

ISM

GO MF

Protein

NP_001077539.1 [sequence] [blastp]
NP_001322547.1 [sequence] [blastp]
NP_001322548.1 [sequence] [blastp]
NP_172928.2 [sequence] [blastp]

Subcellular
localization
wolf

nucl 5, golg 1, chlo 1, cyto 1, plas 1, vacu 1, E.R. 1, E.R._vacu 1, E.R._plas 1, cyto_E.R. 1, cyto_plas 1	(predict for NP_001077539.1)
nucl 5, golg 1, chlo 1, cyto 1, plas 1, vacu 1, E.R. 1, E.R._vacu 1, E.R._plas 1, cyto_E.R. 1, cyto_plas 1	(predict for NP_001322547.1)
nucl 4, cyto 2, cysk_nucl 2, chlo 1, cyto_E.R. 1, cyto_plas 1	(predict for NP_001322548.1)
nucl 4, chlo 1, cyto 1, plas 1, vacu 1, E.R. 1, golg 1, chlo_mito 1, golg_plas 1, E.R._vacu 1, cyto_pero 1, E.R._plas 1	(predict for NP_172928.2)

Subcellular
localization
TargetP

chlo 8	(predict for NP_001077539.1)
chlo 8	(predict for NP_001322547.1)
chlo 8	(predict for NP_001322548.1)
chlo 8	(predict for NP_172928.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.4.hor for SDS	ath-m.9 for SDS	ath-m.4.bio for SDS	ath-m.4.lig for SDS	ath-m.4.str for SDS	ath-m.4.tis for SDS	bra-r.6 for 103872270	bra-r.6 for 103842946	ghi-r.1 for 107943673	ghi-r.1 for 107938726	sot-r.1 for 102605664	osa-u.5 for 4332116	zma-u.5 for 100283361	zma-u.5 for 103633005	tae-r.2 for 123098187	bdi-r.1 for 100837451

Ortholog ID: 7032

Species

bra

ghi

sot

osa

zma

tae

bdi

Symbol

Function^*

cyclin-SDS

cyclin-SDS-like

cyclin-SDS

cyclin-SDS-like

cyclin, N-terminal domain containing protein

cyclin-SDS-like

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00440	Phosphonate and phosphinate metabolism	2
ghi00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00860	Porphyrin metabolism	6
tae01240	Biosynthesis of cofactors	6
tae00520	Amino sugar and nucleotide sugar metabolism	3
tae00561	Glycerolipid metabolism	3
tae00566	Sulfoquinovose metabolism	3

Expression

Expression pattern

Entrez Gene ID^*

103872270

103842946

107943673

107938726

102605664

4332116

100283361

103633005

123098187

100837451

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to SDS (ath-m.4.hor coexpression data)

Top 50 enrichment test to SDS (ath-m.4.hor coexpression data)


Species	ath	bra	ghi	sot	osa	zma	tae	bdi	sbi	cre	ppo	mtr	sly	cit	gma	nta	hvu	vvi	bna
Paralog	6	2	2	1	1	2	1	1	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to SDS (ath-m.4.hor coexpression data)

Top 50 enrichment test to SDS (ath-m.4.hor coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**