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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.hor   CLH1   chlorophyllase 1 
 ath-u.5   CLH1   chlorophyllase 1 
 ath-r.7   CLH1   chlorophyllase 1 
 ath-m.9   CLH1   chlorophyllase 1 
 ath-e.2   CLH1   chlorophyllase 1 
 ath-m.4.bio   CLH1   chlorophyllase 1 
 ath-m.4.lig   CLH1   chlorophyllase 1 
 ath-m.4.str   CLH1   chlorophyllase 1 
 ath-m.4.tis   CLH1   chlorophyllase 1 
 bra-r.6   103872768   chlorophyllase-1 
 bra-r.6   103839225   chlorophyllase-2, chloroplastic 
 bra-r.6   103848843   chlorophyllase-2, chloroplastic 
 bna-r.1   106346945   chlorophyllase-1 
 bna-r.1   106366642   chlorophyllase-2-like 
 bna-r.1   106407289   chlorophyllase-2-like 
 ghi-r.1   107887126   chlorophyllase-2 
 cit-r.1   127901493   chlorophyllase-1, chloroplastic 
 cit-r.1   102621972   chlorophyllase-1, chloroplastic 
 gma-u.5   100790901   chlorophyllase-2 
 gma-u.5   100807959   chlorophyllase-1 
 gma-u.5   100808490   chlorophyllase-1 
 vvi-u.5   100244179   chlorophyllase-1 
 vvi-u.5   100252835   chlorophyllase-2 
 ppo-u.5   7474174   chlorophyllase-2 
 ppo-u.5   18109913   chlorophyllase-1, chloroplastic 
 mtr-u.5   25482954   chlorophyllase-2 
 mtr-u.5   11437154   chlorophyllase-1 
 sly-u.5   101265579   chlorophyllase-2 
 sly-u.5   101258376   chlorophyllase-2 
 sot-r.1   102599165   chlorophyllase-2, chloroplastic-like 
 sot-r.1   102584485   chlorophyllase-2, chloroplastic-like 
 nta-r.1   107767570   chlorophyllase-2 
 nta-r.1   107795708   chlorophyllase-1-like 
 nta-r.1   107812657   chlorophyllase-2 
 osa-u.5   4348648   chlorophyllase-2 
 zma-u.5   100383045   uncharacterized LOC100383045 
 zma-u.5   100191887   chlorophyllase-2 
 zma-u.5   103632406   chlorophyllase-2 
 tae-r.2   123064963   chlorophyllase-2 
 tae-r.2   123057940   chlorophyllase-2 
 hvu-r.1   123442869   chlorophyllase-2 
 sbi-r.1   8059442   chlorophyllase-2, chloroplastic 
 sbi-r.1   8057813   chlorophyllase-1 
 bdi-r.1   100839712   chlorophyllase-2, chloroplastic 
 bdi-r.1   100824120   chlorophyllase-1 
 cre-r.1   CHLRE_10g429650v5   uncharacterized protein 
 cre-r.1   CHLRE_03g148750v5   uncharacterized protein 
 cre-r.1   CHLRE_13g570400v5   uncharacterized protein 

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Top 50 coexpressed genes to CLH1 (ath-m.4.hor coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CLH1 (ath-m.4.hor coexpression data)

CoexMap"838554"


athCLH1 | Entrez gene ID : 838554      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 3 3 1 2 3 2 2 2 2 2 3 1 3 2 1 2 2 3
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath00860 [list] [network] Porphyrin metabolism (57 genes)
GO BP
GO:0015996 [list] [network] chlorophyll catabolic process  (14 genes)  IDA  
GO:0050832 [list] [network] defense response to fungus  (282 genes)  IMP  
GO:0042742 [list] [network] defense response to bacterium  (363 genes)  IMP  
GO CC
GO:0000325 [list] [network] plant-type vacuole  (788 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  ISM  
GO:0005634 [list] [network] nucleus  (10367 genes)  HDA  
GO MF
GO:0047746 [list] [network] chlorophyllase activity  (3 genes)  IDA IEA  
Protein NP_564094.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 9  (predict for NP_564094.1)
Subcellular
localization
TargetP
other 7  (predict for NP_564094.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.hor
for
CLH1
ath-u.5
for
CLH1
ath-r.7
for
CLH1
ath-m.9
for
CLH1
ath-e.2
for
CLH1
ath-m.4.bio
for
CLH1
ath-m.4.lig
for
CLH1
ath-m.4.str
for
CLH1
ath-m.4.tis
for
CLH1
bra-r.6
for
103872768
bra-r.6
for
103839225
bra-r.6
for
103848843
bna-r.1
for
106346945
bna-r.1
for
106366642
bna-r.1
for
106407289
ghi-r.1
for
107887126
cit-r.1
for
127901493
cit-r.1
for
102621972
gma-u.5
for
100790901
gma-u.5
for
100807959
gma-u.5
for
100808490
vvi-u.5
for
100244179
vvi-u.5
for
100252835
ppo-u.5
for
7474174
ppo-u.5
for
18109913
mtr-u.5
for
25482954
mtr-u.5
for
11437154
sly-u.5
for
101265579
sly-u.5
for
101258376
sot-r.1
for
102599165
sot-r.1
for
102584485
nta-r.1
for
107767570
nta-r.1
for
107795708
nta-r.1
for
107812657
osa-u.5
for
4348648
zma-u.5
for
100383045
zma-u.5
for
100191887
zma-u.5
for
103632406
tae-r.2
for
123064963
tae-r.2
for
123057940
hvu-r.1
for
123442869
sbi-r.1
for
8059442
sbi-r.1
for
8057813
bdi-r.1
for
100839712
bdi-r.1
for
100824120
cre-r.1
for
CHLRE_10g429650v5
cre-r.1
for
CHLRE_03g148750v5
cre-r.1
for
CHLRE_13g570400v5


Ortholog ID: 1404
Species ath bra bra bra bna bna bna ghi ghi cit cit cit gma gma gma vvi ppo ppo mtr mtr sly sly sot sot nta nta nta osa zma zma zma tae tae hvu sbi sbi bdi bdi cre cre cre
Symbol CLH1 LOC103872768 LOC103839225 LOC103848843 LOC106416159 LOC106451729 LOC125592422 LOC107887126 LOC107914870 LOC127901493 LOC102621972 CHLASE1 LOC100790901 LOC100807959 LOC100808490 LOC100853040 LOC7474174 LOC18109913 LOC25482954 LOC11437154 LOC101265579 LOC101258376 LOC102584485 LOC102583310 LOC107767570 LOC107812657 LOC107820048 LOC4348648 LOC100383045 LOC100191887 LOC103632406 LOC123057940 LOC123077378 LOC123442869 LOC8059442 LOC8057813 LOC100839712 LOC100824120 CHLRE_10g429650v5 CHLRE_03g148750v5 CHLRE_13g570400v5
Function* chlorophyllase 1 chlorophyllase-1 chlorophyllase-2, chloroplastic chlorophyllase-2, chloroplastic chlorophyllase-1 chlorophyllase-2 chlorophyllase-2-like chlorophyllase-2 chlorophyllase-2 chlorophyllase-1, chloroplastic chlorophyllase-1, chloroplastic chloroplast chlorophyllase chlorophyllase-2 chlorophyllase-1 chlorophyllase-1 chlorophyllase-1 chlorophyllase-2 chlorophyllase-1, chloroplastic chlorophyllase-2 chlorophyllase-1 chlorophyllase-2 chlorophyllase-2 chlorophyllase-2, chloroplastic-like chlorophyllase-2, chloroplastic-like chlorophyllase-2 chlorophyllase-2 chlorophyllase-2-like chlorophyllase-2 uncharacterized LOC100383045 chlorophyllase-2 chlorophyllase-2 chlorophyllase-2 chlorophyllase-2 chlorophyllase-2 chlorophyllase-2, chloroplastic chlorophyllase-1 chlorophyllase-2, chloroplastic chlorophyllase-1 uncharacterized protein uncharacterized protein uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath02010 ABC transporters 2
ath04981 Folate transport and metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00592 alpha-Linolenic acid metabolism 3
bra00591 Linoleic acid metabolism 2
bra00999 Biosynthesis of various plant secondary metabolites 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00860 Porphyrin metabolism 2
bna00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00860 Porphyrin metabolism 4
bna00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00860 Porphyrin metabolism 4
bna00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01200 Carbon metabolism 5
ghi00710 Carbon fixation by Calvin cycle 4
ghi04075 Plant hormone signal transduction 4
ghi00904 Diterpenoid biosynthesis 2
ghi00592 alpha-Linolenic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00630 Glyoxylate and dicarboxylate metabolism 4
ghi01200 Carbon metabolism 4
ghi04075 Plant hormone signal transduction 3
ghi00904 Diterpenoid biosynthesis 2
ghi00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04016 MAPK signaling pathway - plant 4
cit04075 Plant hormone signal transduction 2
cit00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00330 Arginine and proline metabolism 2
cit00360 Phenylalanine metabolism 2
cit00380 Tryptophan metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01240 Biosynthesis of cofactors 3
gma00030 Pentose phosphate pathway 2
gma00480 Glutathione metabolism 2
gma01200 Carbon metabolism 2
gma00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00910 Nitrogen metabolism 2
gma01310 Nitrogen cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00904 Diterpenoid biosynthesis 2
gma00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00591 Linoleic acid metabolism 3
ppo00592 alpha-Linolenic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00940 Phenylpropanoid biosynthesis 5
mtr00051 Fructose and mannose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00591 Linoleic acid metabolism 3
sly00592 alpha-Linolenic acid metabolism 3
sly00053 Ascorbate and aldarate metabolism 3
sly00520 Amino sugar and nucleotide sugar metabolism 3
sly01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00860 Porphyrin metabolism 2
nta00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 3
nta00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00902 Monoterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00350 Tyrosine metabolism 2
zma00360 Phenylalanine metabolism 2
zma00380 Tryptophan metabolism 2
zma00901 Indole alkaloid biosynthesis 2
zma00950 Isoquinoline alkaloid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00860 Porphyrin metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00860 Porphyrin metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00906 Carotenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03020 RNA polymerase 2
bdi03420 Nucleotide excision repair 2
bdi00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04136 Autophagy - other 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 838554 103872768 103839225 103848843 106416159 106451729 125592422 107887126 107914870 127901493 102621972 102578008 100790901 100807959 100808490 100853040 7474174 18109913 25482954 11437154 101265579 101258376 102584485 102583310 107767570 107812657 107820048 4348648 100383045 100191887 103632406 123057940 123077378 123442869 8059442 8057813 100839712 100824120 5728111 5721184 5719126
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