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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.hor   AT1G28040   RING/U-box superfamily protein 
 ath-m.9   AT1G28040   RING/U-box superfamily protein 
 ath-m.4.bio   AT1G28040   RING/U-box superfamily protein 
 ath-m.4.lig   AT1G28040   RING/U-box superfamily protein 
 ath-m.4.str   AT1G28040   RING/U-box superfamily protein 
 ath-m.4.tis   AT1G28040   RING/U-box superfamily protein 
 bna-r.1   106413355   RING-H2 finger protein ATL22 
 bna-r.1   125608392   putative RING-H2 finger protein ATL21A 
 ghi-r.1   107948178   putative RING-H2 finger protein ATL21A 
 ghi-r.1   107945862   putative RING-H2 finger protein ATL21A 
 cit-r.1   102619949   putative RING-H2 finger protein ATL21A 
 cit-r.1   127901021   putative RING-H2 finger protein ATL21A 
 gma-u.5   100799895   putative RING-H2 finger protein ATL21A 
 gma-u.5   100798415   putative RING-H2 finger protein ATL21A 
 gma-u.5   100794143   putative RING-H2 finger protein ATL21A 
 mtr-u.5   11432850   putative RING-H2 finger protein ATL21A 
 mtr-u.5   25500705   putative RING-H2 finger protein ATL21A 
 sot-r.1   102580010   putative RING-H2 finger protein ATL21A 
 nta-r.1   107814846   putative RING-H2 finger protein ATL21A 
 nta-r.1   107792914   putative RING-H2 finger protein ATL21A 

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Top 50 coexpressed genes to AT1G28040 (ath-m.4.hor coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT1G28040 (ath-m.4.hor coexpression data)

CoexMap"839697"


athAT1G28040 | Entrez gene ID : 839697      
Species ath bna ghi cit gma mtr sot nta vvi bdi sly osa tae ppo zma cre sbi bra hvu
Paralog 6 2 2 2 3 2 1 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
Protein NP_174125.2 [sequence] [blastp]
Subcellular
localization
wolf
E.R. 2,  chlo 1,  nucl 1,  cyto 1,  plas 1,  cyto_nucl 1,  nucl_plas 1,  E.R._vacu 1,  cyto_plas 1  (predict for NP_174125.2)
Subcellular
localization
TargetP
other 9  (predict for NP_174125.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.hor
for
AT1G28040
ath-m.9
for
AT1G28040
ath-m.4.bio
for
AT1G28040
ath-m.4.lig
for
AT1G28040
ath-m.4.str
for
AT1G28040
ath-m.4.tis
for
AT1G28040
bna-r.1
for
106413355
bna-r.1
for
125608392
ghi-r.1
for
107948178
ghi-r.1
for
107945862
cit-r.1
for
102619949
cit-r.1
for
127901021
gma-u.5
for
100799895
gma-u.5
for
100798415
gma-u.5
for
100794143
mtr-u.5
for
11432850
mtr-u.5
for
25500705
sot-r.1
for
102580010
nta-r.1
for
107814846
nta-r.1
for
107792914


Ortholog ID: 4350
Species ath bra bna bna ghi ghi cit cit gma gma gma mtr mtr sot nta
Symbol AT2G46495 LOC103866279 LOC106413355 LOC106363657 LOC107948178 LOC107945862 LOC102619949 LOC127901021 LOC100799895 LOC100798415 LOC100794143 LOC11432850 LOC25500705 LOC102580010 LOC107792914
Function* RING/U-box superfamily protein putative RING-H2 finger protein ATL21A RING-H2 finger protein ATL22 RING-H2 finger protein ATL22-like putative RING-H2 finger protein ATL21A putative RING-H2 finger protein ATL21A putative RING-H2 finger protein ATL21A putative RING-H2 finger protein ATL21A putative RING-H2 finger protein ATL21A putative RING-H2 finger protein ATL21A putative RING-H2 finger protein ATL21A putative RING-H2 finger protein ATL21A putative RING-H2 finger protein ATL21A putative RING-H2 finger protein ATL21A putative RING-H2 finger protein ATL21A
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00904 Diterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00941 Flavonoid biosynthesis 2
ghi00904 Diterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04141 Protein processing in endoplasmic reticulum 2
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00940 Phenylpropanoid biosynthesis 2
sot04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00999 Biosynthesis of various plant secondary metabolites 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 819259 103866279 106413355 106363657 107948178 107945862 102619949 127901021 100799895 100798415 100794143 11432850 25500705 102580010 107792914
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