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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.hor   SIGA   sigma factor A 
 ath-u.5   SIGA   sigma factor A 
 ath-r.7   SIGA   sigma factor A 
 ath-m.9   SIGA   sigma factor A 
 ath-e.2   SIGA   sigma factor A 
 ath-m.4.bio   SIGA   sigma factor A 
 ath-m.4.lig   SIGA   sigma factor A 
 ath-m.4.str   SIGA   sigma factor A 
 ath-m.4.tis   SIGA   sigma factor A 
 bra-r.6   103853304   RNA polymerase sigma factor sigA 
 bna-r.1   106388196   RNA polymerase sigma factor sigA 
 bna-r.1   106390364   RNA polymerase sigma factor sigA-like 
 ghi-r.1   107938687   RNA polymerase sigma factor sigA 
 ghi-r.1   107913567   RNA polymerase sigma factor sigA 
 ghi-r.1   107909034   RNA polymerase sigma factor sigA 
 cit-r.1   102606892   RNA polymerase sigma factor sigA 
 gma-u.5   100801884   RNA polymerase sigma factor sigA 
 gma-u.5   100794548   RNA polymerase sigma factor sigA 
 vvi-u.5   100256191   RNA polymerase sigma factor sigA 
 ppo-u.5   7493891   RNA polymerase sigma factor sigA 
 ppo-u.5   7459204   RNA polymerase sigma factor sigA 
 mtr-u.5   25480544   RNA polymerase sigma factor sigA 
 sly-u.5   101263418   RNA polymerase sigma factor sigA 
 sly-u.5   101252856   RNA polymerase sigma factor sigA 
 sot-r.1   102592902   RNA polymerase sigma factor sigA 
 sot-r.1   102585592   RNA polymerase sigma factor sigA-like 
 nta-r.1   107804695   RNA polymerase sigma factor sigA 
 nta-r.1   107795931   RNA polymerase sigma factor sigA-like 
 nta-r.1   107790547   RNA polymerase sigma factor sigA-like 
 osa-u.5   4344738   RNA polymerase sigma factor sigA-like 
 zma-u.5   541691   RNA polymerase sigma factor sigA 
 zma-u.5   541692   sigma factor of plastid RNA polymerase 
 tae-r.2   123157122   RNA polymerase sigma factor sigA 
 tae-r.2   123147203   RNA polymerase sigma factor sigA 
 tae-r.2   542980   RNA polymerase sigma factor sigA 
 hvu-r.1   123407383   RNA polymerase sigma factor sigA 
 sbi-r.1   8080867   RNA polymerase sigma factor sigA 
 bdi-r.1   100827900   RNA polymerase sigma factor sigA 

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Top 50 coexpressed genes to SIGA (ath-m.4.hor coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to SIGA (ath-m.4.hor coexpression data)

CoexMap"842794"


athSIGA | Entrez gene ID : 842794      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 3 1 2 1 2 1 2 2 3 1 2 3 1 1 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0071461 [list] [network] cellular response to redox state  (2 genes)  IDA  
GO:0080005 [list] [network] photosystem stoichiometry adjustment  (3 genes)  IDA  
GO:0006352 [list] [network] DNA-templated transcription initiation  (35 genes)  IDA TAS  
GO:0071482 [list] [network] cellular response to light stimulus  (105 genes)  IEP  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1618 genes)  IDA  
GO:2001141 [list] [network] regulation of RNA biosynthetic process  (1621 genes)  IMP  
GO CC
GO:0009507 [list] [network] chloroplast  (5014 genes)  IDA ISM  
GO MF
GO:0016987 [list] [network] sigma factor activity  (6 genes)  IMP ISS  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001319322.1 [sequence] [blastp]
NP_176666.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 5,  chlo 3,  mito 1  (predict for NP_001319322.1)
cyto 6,  chlo 1,  mito 1,  chlo_mito 1  (predict for NP_176666.1)
Subcellular
localization
TargetP
other 3  (predict for NP_001319322.1)
other 3  (predict for NP_176666.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.hor
for
SIGA
ath-u.5
for
SIGA
ath-r.7
for
SIGA
ath-m.9
for
SIGA
ath-e.2
for
SIGA
ath-m.4.bio
for
SIGA
ath-m.4.lig
for
SIGA
ath-m.4.str
for
SIGA
ath-m.4.tis
for
SIGA
bra-r.6
for
103853304
bna-r.1
for
106388196
bna-r.1
for
106390364
ghi-r.1
for
107938687
ghi-r.1
for
107913567
ghi-r.1
for
107909034
cit-r.1
for
102606892
gma-u.5
for
100801884
gma-u.5
for
100794548
vvi-u.5
for
100256191
ppo-u.5
for
7493891
ppo-u.5
for
7459204
mtr-u.5
for
25480544
sly-u.5
for
101263418
sly-u.5
for
101252856
sot-r.1
for
102592902
sot-r.1
for
102585592
nta-r.1
for
107804695
nta-r.1
for
107795931
nta-r.1
for
107790547
osa-u.5
for
4344738
zma-u.5
for
541691
zma-u.5
for
541692
tae-r.2
for
123157122
tae-r.2
for
123147203
tae-r.2
for
542980
hvu-r.1
for
123407383
sbi-r.1
for
8080867
bdi-r.1
for
100827900


Ortholog ID: 7086
Species ath bra bna bna ghi ghi ghi cit gma gma vvi ppo ppo mtr sly sly sot sot nta nta nta osa zma zma tae tae tae hvu sbi bdi
Symbol SIGA LOC103853304 LOC106388196 LOC106390364 LOC107938687 LOC107913567 LOC107891353 LOC102606892 LOC100801884 LOC100794548 LOC100256191 LOC7493891 LOC7459204 LOC25480544 LOC101263418 LOC101252856 LOC102592902 LOC102585592 LOC107804695 LOC107790547 LOC107805048 LOC4344738 LOC541691 LOC541692 LOC123157122 LOC123147203 LOC542980 LOC123407383 LOC8080867 LOC100827900
Function* sigma factor A RNA polymerase sigma factor sigA RNA polymerase sigma factor sigA RNA polymerase sigma factor sigA-like RNA polymerase sigma factor sigA RNA polymerase sigma factor sigA RNA polymerase sigma factor sigA RNA polymerase sigma factor sigA RNA polymerase sigma factor sigA RNA polymerase sigma factor sigA RNA polymerase sigma factor sigA RNA polymerase sigma factor sigA RNA polymerase sigma factor sigA RNA polymerase sigma factor sigA RNA polymerase sigma factor sigA RNA polymerase sigma factor sigA RNA polymerase sigma factor sigA RNA polymerase sigma factor sigA-like RNA polymerase sigma factor sigA RNA polymerase sigma factor sigA-like RNA polymerase sigma factor sigA RNA polymerase sigma factor sigA-like RNA polymerase sigma factor sigA sigma factor of plastid RNA polymerase RNA polymerase sigma factor sigA RNA polymerase sigma factor sigA RNA polymerase sigma factor sigA RNA polymerase sigma factor sigA RNA polymerase sigma factor sigA RNA polymerase sigma factor sigA
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00860 Porphyrin metabolism 5
ath00900 Terpenoid backbone biosynthesis 2
ath00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00860 Porphyrin metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00860 Porphyrin metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04712 Circadian rhythm - plant 5
ghi00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04712 Circadian rhythm - plant 6
ghi00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00196 Photosynthesis - antenna proteins 5
cit00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00860 Porphyrin metabolism 8
gma00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00710 Carbon fixation by Calvin cycle 8
gma01200 Carbon metabolism 8
gma00860 Porphyrin metabolism 5
gma00010 Glycolysis / Gluconeogenesis 3
gma00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00195 Photosynthesis 8
ppo00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00196 Photosynthesis - antenna proteins 8
ppo00195 Photosynthesis 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00196 Photosynthesis - antenna proteins 4
mtr00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01200 Carbon metabolism 5
sly00710 Carbon fixation by Calvin cycle 4
sly01230 Biosynthesis of amino acids 3
sly00010 Glycolysis / Gluconeogenesis 2
sly00030 Pentose phosphate pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01240 Biosynthesis of cofactors 2
sot00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00860 Porphyrin metabolism 8
nta00195 Photosynthesis 2
nta00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00860 Porphyrin metabolism 4
osa00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00860 Porphyrin metabolism 4
bdi01240 Biosynthesis of cofactors 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 842794 103853304 106388196 106390364 107938687 107913567 107891353 102606892 100801884 100794548 100256191 7493891 7459204 25480544 101263418 101252856 102592902 102585592 107804695 107790547 107805048 4344738 541691 541692 123157122 123147203 542980 123407383 8080867 100827900
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