ATTED-II : GeneCoexpression result

Species	Gene	Description
sbi-r.1	8054231	uncharacterized LOC8054231
zma-u.5	100381737	urb2
osa-u.5	4331982	uncharacterized LOC4331982
tae-r.2	123098356	uncharacterized LOC123098356
tae-r.2	123093071	uncharacterized LOC123093071
tae-r.2	123084993	uncharacterized LOC123084993
hvu-r.1	123449396	uncharacterized LOC123449396
bdi-r.1	100832613	uncharacterized LOC100832613
ath-u.5	AT4G30150	Urb2/Npa2 family protein
gma-u.5	102667416	uncharacterized LOC102667416
gma-u.5	100802682	uncharacterized LOC100802682
sly-u.5	101247970	uncharacterized LOC101247970
bra-r.6	103852906	uncharacterized LOC103852906
vvi-u.5	100248664	uncharacterized LOC100248664
ppo-u.5	7453629	uncharacterized LOC7453629
mtr-u.5	25492849	uncharacterized LOC25492849
ghi-r.1	107916705	uncharacterized LOC107916705
ghi-r.1	107922238	uncharacterized LOC107922238
bna-r.1	BNAC01G08230D	uncharacterized BNAC01G08230D
bna-r.1	BNAA01G06860D	uncharacterized BNAA01G06860D
sot-r.1	102601821	uncharacterized LOC102601821
cit-r.1	102615643	uncharacterized LOC102615643
nta-r.1	107806499	uncharacterized LOC107806499
nta-r.1	107810906	uncharacterized LOC107810906

Annotation

functional annotation

KEGG

GO BP

GO:0042254 [list] [network] ribosome biogenesis

(293 genes)

IEA

GO CC

GO:0005730 [list] [network] nucleolus

(194 genes)

IEA

GO MF

Protein

XP_002468317.2 [sequence] [blastp]
XP_021307662.1 [sequence] [blastp]

Subcellular
localization
wolf

plas 6, E.R. 1, nucl 1, mito 1, pero 1, E.R._vacu 1, cyto_E.R. 1	(predict for XP_002468317.2)
plas 6, E.R. 1, nucl 1, mito 1, pero 1, E.R._vacu 1, cyto_E.R. 1	(predict for XP_021307662.1)

Subcellular
localization
TargetP

mito 5, chlo 3	(predict for XP_002468317.2)
mito 5, chlo 3	(predict for XP_021307662.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sbi-r.1 for 8054231	zma-u.5 for 100381737	osa-u.5 for 4331982	tae-r.2 for 123098356	tae-r.2 for 123093071	tae-r.2 for 123084993	hvu-r.1 for 123449396	bdi-r.1 for 100832613	ath-u.5 for AT4G30150	gma-u.5 for 102667416	gma-u.5 for 100802682	sly-u.5 for 101247970	bra-r.6 for 103852906	vvi-u.5 for 100248664	ppo-u.5 for 7453629	mtr-u.5 for 25492849	ghi-r.1 for 107916705	ghi-r.1 for 107922238	bna-r.1 for BNAC01G08230D	bna-r.1 for BNAA01G06860D	sot-r.1 for 102601821	cit-r.1 for 102615643	nta-r.1 for 107806499	nta-r.1 for 107810906

Ortholog

Ortholog ID: 10892

Species

sbi

zma

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

Symbol

Function^*

uncharacterized LOC8054231

urb2

uncharacterized LOC4331982

uncharacterized LOC123098356

uncharacterized LOC123093071

uncharacterized LOC123084993

uncharacterized LOC123449396

uncharacterized LOC100832613

Urb2/Npa2 family protein

uncharacterized LOC102667416

uncharacterized LOC100802682

uncharacterized LOC101247970

uncharacterized LOC103852906

uncharacterized LOC100248664

uncharacterized LOC7453629

uncharacterized LOC25492849

uncharacterized LOC107916705

uncharacterized LOC107922238

uncharacterized BNAC01G08230D

uncharacterized BNAA01G06860D

uncharacterized LOC102601821

uncharacterized LOC102615643

uncharacterized LOC107806499

uncharacterized LOC107810906

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	5
tae03020	RNA polymerase	3
tae03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	5
tae03020	RNA polymerase	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03013	Nucleocytoplasmic transport	6
hvu03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03013	Nucleocytoplasmic transport	4
bdi03008	Ribosome biogenesis in eukaryotes	2
bdi03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03013	Nucleocytoplasmic transport	5
ath03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03008	Ribosome biogenesis in eukaryotes	11

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03013	Nucleocytoplasmic transport	3
gma03008	Ribosome biogenesis in eukaryotes	2
gma03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03008	Ribosome biogenesis in eukaryotes	5
sly03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	3
bra03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03008	Ribosome biogenesis in eukaryotes	3
vvi03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03008	Ribosome biogenesis in eukaryotes	7
mtr03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03013	Nucleocytoplasmic transport	4
ghi03020	RNA polymerase	4
ghi03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03020	RNA polymerase	4
ghi03013	Nucleocytoplasmic transport	2
ghi03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03008	Ribosome biogenesis in eukaryotes	5
sot03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	6
nta03020	RNA polymerase	2
nta03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	4
nta03020	RNA polymerase	2

Expression

Expression pattern

Entrez Gene ID^*

8054231

100381737

4331982

123098356

123093071

123084993

123449396

100832613

829138

102667416

100802682

101247970

103852906

100248664

7453629

25492849

107916705

107922238

106401511

106390807

102601821

102615643

107806499

107810906

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 8054231 (sbi-r.1 coexpression data)

Top 50 enrichment test to 8054231 (sbi-r.1 coexpression data)


Species	sbi	zma	osa	tae	hvu	bdi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	1	1	1	3	1	1	1	2	1	1	1	1	1	2	2	1	1	2	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 8054231 (sbi-r.1 coexpression data)

Top 50 enrichment test to 8054231 (sbi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**