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Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   8055149   60S ribosomal export protein NMD3 
 zma-u.5   100502456   nonsense-mediated mRNA decay NMD3 family protein 
 zma-u.5   100194368   nonsense-mediated mRNA decay NMD3 family protein 
 osa-u.5   4349477   uncharacterized LOC4349477 
 tae-r.2   123181456   60S ribosomal export protein NMD3 
 tae-r.2   123050134   60S ribosomal export protein NMD3 
 tae-r.2   123125780   60S ribosomal export protein NMD3 
 hvu-r.1   123436040   60S ribosomal export protein NMD3 
 bdi-r.1   100835245   60S ribosomal export protein NMD3 
 ath-u.5   NMD3   nonsense-mediated mRNA decay NMD3 family protein 
 gma-u.5   100799026   60S ribosomal export protein NMD3 
 gma-u.5   100783829   60S ribosomal export protein NMD3 
 sly-u.5   101253905   uncharacterized LOC101253905 
 bra-r.6   103849030   60S ribosomal export protein NMD3 
 bra-r.6   103831080   60S ribosomal export protein NMD3 
 vvi-u.5   100245020   uncharacterized LOC100245020 
 vvi-u.5   100241812   uncharacterized LOC100241812 
 ppo-u.5   7472601   uncharacterized LOC7472601 
 mtr-u.5   11406641   60S ribosomal export protein NMD3 
 ghi-r.1   107958610   60S ribosomal export protein NMD3 
 ghi-r.1   107892359   60S ribosomal export protein NMD3 
 ghi-r.1   107892343   60S ribosomal export protein NMD3 
 bna-r.1   106427944   60S ribosomal export protein NMD3-like 
 bna-r.1   106426274   60S ribosomal export protein NMD3-like 
 bna-r.1   125587881   60S ribosomal export protein NMD3-like 
 sot-r.1   102587719   60S ribosomal export protein NMD3-like 
 cit-r.1   102628152   uncharacterized LOC102628152 
 nta-r.1   107796851   uncharacterized LOC107796851 
 nta-r.1   142161668   uncharacterized LOC142161668 
 cre-r.1   CHLRE_15g640250v5   uncharacterized protein 
 cre-r.1   CHLRE_15g640652v5   uncharacterized protein 

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Top 50 coexpressed genes to 8055149 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 8055149 (sbi-r.1 coexpression data)

CoexMap"8055149"


sbiLOC8055149 | Entrez gene ID : 8055149      
Species sbi zma osa tae hvu bdi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 1 2 1 3 1 1 1 2 1 2 2 1 1 3 3 1 1 2 2
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sbi03008 [list] [network] Ribosome biogenesis in eukaryotes (91 genes)
sbi03013 [list] [network] Nucleocytoplasmic transport (112 genes)
GO BP
GO:0000055 [list] [network] ribosomal large subunit export from nucleus  (11 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (2977 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (4816 genes)  IEA  
GO MF
GO:0043023 [list] [network] ribosomal large subunit binding  (10 genes)  IEA  
Protein XP_002464890.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  vacu 3,  extr 1,  E.R._vacu 1  (predict for XP_002464890.1)
Subcellular
localization
TargetP
other 2  (predict for XP_002464890.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
8055149
zma-u.5
for
100502456
zma-u.5
for
100194368
osa-u.5
for
4349477
tae-r.2
for
123181456
tae-r.2
for
123050134
tae-r.2
for
123125780
hvu-r.1
for
123436040
bdi-r.1
for
100835245
ath-u.5
for
NMD3
gma-u.5
for
100799026
gma-u.5
for
100783829
sly-u.5
for
101253905
bra-r.6
for
103849030
bra-r.6
for
103831080
vvi-u.5
for
100245020
vvi-u.5
for
100241812
ppo-u.5
for
7472601
mtr-u.5
for
11406641
ghi-r.1
for
107958610
ghi-r.1
for
107892359
ghi-r.1
for
107892343
bna-r.1
for
106427944
bna-r.1
for
106426274
bna-r.1
for
125587881
sot-r.1
for
102587719
cit-r.1
for
102628152
nta-r.1
for
107796851
nta-r.1
for
142161668
cre-r.1
for
CHLRE_15g640250v5
cre-r.1
for
CHLRE_15g640652v5


Ortholog ID: 6480
Species sbi zma zma osa tae tae tae hvu bdi ath gma gma sly bra bra vvi vvi ppo mtr ghi ghi ghi bna bna bna sot cit nta nta cre cre
Symbol LOC8055149 LOC100502456 LOC100194368 LOC4349477 LOC123181456 LOC123050134 LOC123125780 LOC123436040 LOC100835245 NMD3 LOC100799026 LOC100783829 LOC101253905 LOC103849030 LOC103831080 LOC100245020 LOC100241812 LOC7472601 LOC11406641 LOC107958610 LOC107892359 LOC107892343 LOC106427944 LOC106426274 LOC111199292 LOC102587719 LOC102628152 LOC107796851 LOC142161668 CHLRE_15g640250v5 CHLRE_15g640652v5
Function* 60S ribosomal export protein NMD3 nonsense-mediated mRNA decay NMD3 family protein nonsense-mediated mRNA decay NMD3 family protein uncharacterized LOC4349477 60S ribosomal export protein NMD3 60S ribosomal export protein NMD3 60S ribosomal export protein NMD3 60S ribosomal export protein NMD3 60S ribosomal export protein NMD3 nonsense-mediated mRNA decay NMD3 family protein 60S ribosomal export protein NMD3 60S ribosomal export protein NMD3 uncharacterized LOC101253905 60S ribosomal export protein NMD3 60S ribosomal export protein NMD3 uncharacterized LOC100245020 uncharacterized LOC100241812 uncharacterized LOC7472601 60S ribosomal export protein NMD3 60S ribosomal export protein NMD3 60S ribosomal export protein NMD3 60S ribosomal export protein NMD3 60S ribosomal export protein NMD3-like 60S ribosomal export protein NMD3-like 60S ribosomal export protein NMD3-like 60S ribosomal export protein NMD3-like uncharacterized LOC102628152 uncharacterized LOC107796851 uncharacterized LOC142161668 uncharacterized protein uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 6
zma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 3
zma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 2
osa03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 3
tae03013 Nucleocytoplasmic transport 3
tae00450 Selenocompound metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 5
tae03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 6
tae03013 Nucleocytoplasmic transport 3
tae00970 Aminoacyl-tRNA biosynthesis 3
tae00450 Selenocompound metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 3
bdi03013 Nucleocytoplasmic transport 2
bdi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 5
ath03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 5
gma03013 Nucleocytoplasmic transport 3
gma03010 Ribosome 2
gma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 6
gma03013 Nucleocytoplasmic transport 3
gma03008 Ribosome biogenesis in eukaryotes 3
gma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 3
vvi00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 5
ppo03040 Spliceosome 5
ppo03013 Nucleocytoplasmic transport 4
ppo03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 5
ghi03013 Nucleocytoplasmic transport 3
ghi00790 Folate biosynthesis 2
ghi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 3
ghi03013 Nucleocytoplasmic transport 3
ghi00790 Folate biosynthesis 2
ghi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 3
ghi03013 Nucleocytoplasmic transport 3
ghi00790 Folate biosynthesis 2
ghi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 6
bna03013 Nucleocytoplasmic transport 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 6
bna03013 Nucleocytoplasmic transport 4
bna03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 6
bna03013 Nucleocytoplasmic transport 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 4
sot03013 Nucleocytoplasmic transport 4
sot03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03013 Nucleocytoplasmic transport 3
cit03010 Ribosome 2
cit03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
nta03013 Nucleocytoplasmic transport 2
nta00750 Vitamin B6 metabolism 2
nta01240 Biosynthesis of cofactors 2
nta00910 Nitrogen metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
nta03013 Nucleocytoplasmic transport 2
nta00750 Vitamin B6 metabolism 2
nta01240 Biosynthesis of cofactors 2
nta00910 Nitrogen metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 5
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 8055149 100502456 100194368 4349477 123181456 123050134 123125780 123436040 100835245 814908 100799026 100783829 101253905 103849030 103831080 100245020 100241812 7472601 11406641 107958610 107892359 107892343 106427944 106426274 111199292 102587719 102628152 107796851 142161668 5726704 66056450
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