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Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   8056207   cyclin-D2-1 
 sbi-r.1   8054229   cyclin-D5-3 
 sbi-r.1   8056911   cyclin-D4-1 
 sbi-r.1   8061553   cyclin-D2-2 
 zma-u.5   100283538   cyclin delta-2 
 zma-u.5   100285876   cyclin delta-2 
 osa-u.5   9272445   cyclin-D1-2 
 osa-u.5   4331985   cyclin-D5-3-like 
 tae-r.2   123044173   cyclin-D2-2 
 tae-r.2   123052052   cyclin-D2-2 
 hvu-r.1   123452775   cyclin-D5-2-like 
 hvu-r.1   123425263   cyclin-D2-2-like 
 hvu-r.1   123397778   cyclin-D2-1 
 bdi-r.1   100821457   cyclin-D5-2 
 bdi-r.1   100841255   cyclin-D4-2 
 bdi-r.1   100836992   cyclin-D2-1 
 ath-u.5   CYCD2;1   Cyclin D2;1 
 ath-u.5   CYCD1;1   CYCLIN D1;1 
 ath-u.5   CYCD3;2   CYCLIN D3;2 
 gma-u.5   100802683   cyclin-D3-2 
 gma-u.5   100811122   cyclin-D3-1 
 gma-u.5   100812660   cyclin-D4-1 
 sly-u.5   cycd3c2   D-type cyclin-2 
 sly-u.5   cycd3c3   D-type cyclin-3 
 bra-r.6   103846805   cyclin-D4-2 
 bra-r.6   103860643   cyclin-D3-3 
 vvi-u.5   100854424   cyclin-D5-1 
 vvi-u.5   104878152   uncharacterized LOC104878152 
 ppo-u.5   7476401   cyclin-D3-3 
 ppo-u.5   7462589   cyclin-D3-2 
 ppo-u.5   7462617   cyclin-D1-1 
 mtr-u.5   11433995   cyclin-D5-1 
 mtr-u.5   11431822   cyclin-D3-1 
 mtr-u.5   11420885   cyclin-D4-2 
 ghi-r.1   107921272   cyclin-D3-3 
 ghi-r.1   107911621   cyclin-D4-2 
 ghi-r.1   107913282   cyclin-D5-1 
 bna-r.1   106409485   cyclin-D3-3 
 bna-r.1   106410589   cyclin-D5-1 
 bna-r.1   106411811   cyclin-D2-1-like 
 sot-r.1   102600091   cyclin-D4-1-like 
 sot-r.1   102605668   cyclin-D1-1 
 cit-r.1   102622171   cyclin-D1-1 
 cit-r.1   102630732   cyclin-D4-1-like 
 cit-r.1   102628473   cyclin-D3-2 
 nta-r.1   107811128   cyclin-D4-1 
 nta-r.1   107782437   cyclin-D4-1-like 
 nta-r.1   107782163   cyclin-D3-2 
 cre-r.1   CHLRE_09g414416v5   uncharacterized protein 
 cre-r.1   CHLRE_06g289750v5   uncharacterized protein 
 cre-r.1   CHLRE_11g467772v5   uncharacterized protein 

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Top 50 coexpressed genes to 8056207 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 8056207 (sbi-r.1 coexpression data)

CoexMap"8056207"


sbiLOC8056207 | Entrez gene ID : 8056207      
Species sbi zma osa tae hvu bdi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 4 2 2 2 3 3 3 3 2 2 2 3 3 3 3 2 3 3 3
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0044772 [list] [network] mitotic cell cycle phase transition  (39 genes)  IEA  
GO:0000079 [list] [network] regulation of cyclin-dependent protein serine/threonine kinase activity  (52 genes)  IEA  
GO CC
GO:0000307 [list] [network] cyclin-dependent protein kinase holoenzyme complex  (70 genes)  IEA  
GO:0005634 [list] [network] nucleus  (2977 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (4816 genes)  IEA  
GO MF
GO:0016538 [list] [network] cyclin-dependent protein serine/threonine kinase regulator activity  (49 genes)  IEA  
Protein XP_002462322.1 [sequence] [blastp]
XP_021308869.1 [sequence] [blastp]
XP_021308870.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  chlo 3,  cysk_nucl 3,  nucl_plas 3  (predict for XP_002462322.1)
nucl 6,  chlo 3,  cysk_nucl 3,  nucl_plas 3  (predict for XP_021308869.1)
nucl 8,  chlo 1  (predict for XP_021308870.1)
Subcellular
localization
TargetP
scret 9,  other 3  (predict for XP_002462322.1)
scret 9,  other 3  (predict for XP_021308869.1)
scret 9,  other 3  (predict for XP_021308870.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
8056207
sbi-r.1
for
8054229
sbi-r.1
for
8056911
sbi-r.1
for
8061553
zma-u.5
for
100283538
zma-u.5
for
100285876
osa-u.5
for
9272445
osa-u.5
for
4331985
tae-r.2
for
123044173
tae-r.2
for
123052052
hvu-r.1
for
123452775
hvu-r.1
for
123425263
hvu-r.1
for
123397778
bdi-r.1
for
100821457
bdi-r.1
for
100841255
bdi-r.1
for
100836992
ath-u.5
for
CYCD2;1
ath-u.5
for
CYCD1;1
ath-u.5
for
CYCD3;2
gma-u.5
for
100802683
gma-u.5
for
100811122
gma-u.5
for
100812660
sly-u.5
for
cycd3c2
sly-u.5
for
cycd3c3
bra-r.6
for
103846805
bra-r.6
for
103860643
vvi-u.5
for
100854424
vvi-u.5
for
104878152
ppo-u.5
for
7476401
ppo-u.5
for
7462589
ppo-u.5
for
7462617
mtr-u.5
for
11433995
mtr-u.5
for
11431822
mtr-u.5
for
11420885
ghi-r.1
for
107921272
ghi-r.1
for
107911621
ghi-r.1
for
107913282
bna-r.1
for
106409485
bna-r.1
for
106410589
bna-r.1
for
106411811
sot-r.1
for
102600091
sot-r.1
for
102605668
cit-r.1
for
102622171
cit-r.1
for
102630732
cit-r.1
for
102628473
nta-r.1
for
107811128
nta-r.1
for
107782437
nta-r.1
for
107782163
cre-r.1
for
CHLRE_09g414416v5
cre-r.1
for
CHLRE_06g289750v5
cre-r.1
for
CHLRE_11g467772v5


Ortholog ID: 67
Species sbi sbi zma zma zma osa osa tae tae hvu hvu hvu bdi bdi ath ath ath gma gma gma sly sly bra bra bra vvi vvi vvi ppo ppo mtr mtr ghi ghi ghi bna bna bna sot cit cit cit nta nta nta cre cre cre
Symbol LOC8078902 LOC8074298 LOC103643161 LOC103647502 LOC100273934 LOC4340499 LOC4346937 LOC123052052 LOC123121432 LOC123398931 LOC123451148 LOC123449393 LOC100841255 LOC100832008 CYCD1;1 CYCD4;1 CYCD3;3 LOC100798728 LOC100807175 LOC100804102 cycD3 LOC101248769 LOC103862565 LOC103864358 LOC103829523 LOC104878152 LOC100255261 LOC100247298 LOC7490056 LOC18104838 LOC11433995 LOC25489960 LOC107899915 LOC107908885 LOC107932943 LOC106409485 LOC106417667 LOC106402828 LOC102583812 LOC102630732 LOC102627697 LOC102606606 LOC107782437 LOC107782163 LOC107776537 CHLRE_09g414416v5 CHLRE_11g467772v5 CHLRE_06g284350v5
Function* cyclin-D3-1 cyclin-D5-2 cyclin-D4-2-like cyclin-D4-1 uncharacterized LOC100273934 cyclin-D3-1-like cyclin-D2-1-like cyclin-D2-2 cyclin-D2-1 cyclin-D4-1-like cyclin-D5-1-like cyclin-D5-3-like cyclin-D4-2 cyclin-D5-3 CYCLIN D1;1 CYCLIN D4;1 CYCLIN D3;3 cyclin-D5-1 cyclin-D3-3 cyclin-D3-1-like cyclin D3.1 cyclin-D2-1 cyclin-D5-1 cyclin-D2-1 cyclin-D3-2 uncharacterized LOC104878152 cyclin-D1-1 cyclin-D4-2 cyclin-D3-1 cyclin-D3-1 cyclin-D5-1 cyclin-D5-1 cyclin-D4-2 cyclin-D3-1 cyclin-D3-3 cyclin-D3-3 cyclin-D4-1-like cyclin-D3-3 cyclin-D3-3-like cyclin-D4-1-like cyclin-D2-2-like cyclin-D5-1 cyclin-D4-1-like cyclin-D3-2 cyclin-D4-1-like uncharacterized protein uncharacterized protein uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04141 Protein processing in endoplasmic reticulum 8
sbi03030 DNA replication 5
sbi04145 Phagosome 3
sbi03060 Protein export 3
sbi04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 4
osa03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 5
tae03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00460 Cyanoamino acid metabolism 3
tae00500 Starch and sucrose metabolism 3
tae00999 Biosynthesis of various plant secondary metabolites 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04814 Motor proteins 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03030 DNA replication 6
ath03420 Nucleotide excision repair 3
ath03430 Mismatch repair 3
ath03440 Homologous recombination 3
ath03460 Fanconi anemia pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04145 Phagosome 2
ath04517 IgSF CAM signaling 2
ath04814 Motor proteins 2
ath04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 2
gma00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00240 Pyrimidine metabolism 2
sly01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03030 DNA replication 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00010 Glycolysis / Gluconeogenesis 2
bra00500 Starch and sucrose metabolism 2
bra01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04075 Plant hormone signal transduction 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00010 Glycolysis / Gluconeogenesis 2
vvi00052 Galactose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00944 Flavone and flavonol biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 5
ghi04145 Phagosome 2
ghi04148 Efferocytosis 2
ghi04517 IgSF CAM signaling 2
ghi04518 Integrin signaling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 7
bna00270 Cysteine and methionine metabolism 2
bna03410 Base excision repair 2
bna03420 Nucleotide excision repair 2
bna03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03030 DNA replication 7
sot04075 Plant hormone signal transduction 2
sot01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00520 Amino sugar and nucleotide sugar metabolism 2
cit01240 Biosynthesis of cofactors 2
cit01250 Biosynthesis of nucleotide sugars 2
cit00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00053 Ascorbate and aldarate metabolism 6
nta00520 Amino sugar and nucleotide sugar metabolism 6
nta01240 Biosynthesis of cofactors 6
nta01250 Biosynthesis of nucleotide sugars 6
nta00600 Sphingolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00100 Steroid biosynthesis 5
nta04145 Phagosome 4
nta04517 IgSF CAM signaling 4
nta04814 Motor proteins 4
nta04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00053 Ascorbate and aldarate metabolism 3
nta00520 Amino sugar and nucleotide sugar metabolism 3
nta01240 Biosynthesis of cofactors 3
nta01250 Biosynthesis of nucleotide sugars 3
nta00240 Pyrimidine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03013 Nucleocytoplasmic transport 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 8078902 8074298 103643161 103647502 100273934 4340499 4346937 123052052 123121432 123398931 123451148 123449393 100841255 100832008 843357 836667 824169 100798728 100807175 100804102 543748 101248769 103862565 103864358 103829523 104878152 100255261 100247298 7490056 18104838 11433995 25489960 107899915 107908885 107932943 106409485 106417667 106402828 102583812 102630732 102627697 102606606 107782437 107782163 107776537 5722348 5725073 5720978
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