ATTED-II : GeneCoexpression result

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Orthologous genes in OrthoFinder^**

Species	Gene	Description
sbi-r.1	8059878	protein HGV2
zma-u.5	103636990	histone-binding protein N1/N2
zma-u.5	103641034	uncharacterized LOC103641034
zma-u.5	103631912	uncharacterized LOC103631912
osa-u.5	4342292	uncharacterized LOC4342292
tae-r.2	123045074	protein HGV2
tae-r.2	123052913	protein NASP homolog 1
tae-r.2	123087828	uncharacterized LOC123087828
hvu-r.1	123453151	uncharacterized LOC123453151
hvu-r.1	123426312	protein NASP homolog 1-like
hvu-r.1	123453149	uncharacterized LOC123453149
bdi-r.1	100836800	protein HGV2
ath-u.5	AT4G37210	Tetratricopeptide repeat (TPR)-like superfamily protein
gma-u.5	100789496	tetratricopeptide repeat superfamily protein
gma-u.5	100776465	NASP-related protein sim3
sly-u.5	101257719	NASP-related protein sim3
bra-r.6	103864825	nuclear autoantigenic sperm protein
bra-r.6	103835010	NASP-related protein sim3
vvi-u.5	100248980	uncharacterized LOC100248980
ppo-u.5	7480483	uncharacterized LOC7480483
ppo-u.5	7473125	uncharacterized LOC7473125
mtr-u.5	11413488	NASP-related protein sim3
ghi-r.1	107958535	uncharacterized LOC107958535
ghi-r.1	107909350	protein HGV2
ghi-r.1	121223644	nuclear autoantigenic sperm protein
bna-r.1	125580517	NASP-related protein sim3-like
bna-r.1	125584444	NASP-related protein sim3-like
bna-r.1	106361427	NASP-related protein sim3
sot-r.1	102603212	NASP-related protein sim3
cit-r.1	102619438	uncharacterized LOC102619438
nta-r.1	107826679	uncharacterized LOC107826679
nta-r.1	107824241	uncharacterized LOC107824241
cre-r.1	CHLRE_06g280800v5	uncharacterized protein

Top 50 coexpressed genes to 8059878 (sbi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 8059878 (sbi-r.1 coexpression data)

CoexMap"8059878"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0034080 [list] [network] CENP-A containing chromatin assembly	(1 genes)	IEA
GO:0006335 [list] [network] DNA replication-dependent chromatin assembly	(3 genes)	IEA

GO CC

GO:0005654 [list] [network] nucleoplasm

(211 genes)

IEA

GO MF

GO:0042393 [list] [network] histone binding

(50 genes)

IEA

Protein

XP_002459284.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 6, mito 1, plas 1, mito_plas 1

(predict for XP_002459284.1)

Subcellular
localization
TargetP

other 7, chlo 5

(predict for XP_002459284.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sbi-r.1 for 8059878	zma-u.5 for 103636990	zma-u.5 for 103641034	zma-u.5 for 103631912	osa-u.5 for 4342292	tae-r.2 for 123045074	tae-r.2 for 123052913	tae-r.2 for 123087828	hvu-r.1 for 123453151	hvu-r.1 for 123426312	hvu-r.1 for 123453149	bdi-r.1 for 100836800	ath-u.5 for AT4G37210	gma-u.5 for 100789496	gma-u.5 for 100776465	sly-u.5 for 101257719	bra-r.6 for 103864825	bra-r.6 for 103835010	vvi-u.5 for 100248980	ppo-u.5 for 7480483	ppo-u.5 for 7473125	mtr-u.5 for 11413488	ghi-r.1 for 107958535	ghi-r.1 for 107909350	ghi-r.1 for 121223644	bna-r.1 for 125580517	bna-r.1 for 125584444	bna-r.1 for 106361427	sot-r.1 for 102603212	cit-r.1 for 102619438	nta-r.1 for 107826679	nta-r.1 for 107824241	cre-r.1 for CHLRE_06g280800v5

Ortholog

Ortholog ID: 3612

Species

sbi

zma

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

Function^*

protein HGV2

uncharacterized LOC103631912

Tetratricopeptide repeat (TPR)-like superfamily protein

TPR domain containing protein

uncharacterized LOC4342292

protein NASP homolog 1

uncharacterized LOC123105394

uncharacterized LOC123114092

uncharacterized LOC123453151

protein NASP homolog 1-like

uncharacterized LOC123453149

protein HGV2

Tetratricopeptide repeat (TPR)-like superfamily protein

tetratricopeptide repeat superfamily protein

NASP-related protein sim3

nuclear autoantigenic sperm protein

NASP-related protein sim3

uncharacterized LOC100248980

uncharacterized LOC7480483

uncharacterized LOC7473125

NASP-related protein sim3

uncharacterized LOC107958535

protein NASP homolog

protein HGV2

NASP-related protein sim3-like

nuclear autoantigenic sperm protein-like

NASP-related protein sim3

uncharacterized LOC102619438

uncharacterized LOC107826679

uncharacterized LOC107824241

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	5
sbi03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03082	ATP-dependent chromatin remodeling	3
zma04120	Ubiquitin mediated proteolysis	3
zma03013	Nucleocytoplasmic transport	2
zma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03013	Nucleocytoplasmic transport	3
osa03040	Spliceosome	3
osa03420	Nucleotide excision repair	2
osa03082	ATP-dependent chromatin remodeling	2
osa03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	2
hvu03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03082	ATP-dependent chromatin remodeling	3
hvu00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03082	ATP-dependent chromatin remodeling	2
bdi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04144	Endocytosis	3
gma04814	Motor proteins	2
gma04820	Cytoskeleton in muscle cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03013	Nucleocytoplasmic transport	4
bra03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03030	DNA replication	3
vvi03410	Base excision repair	3
vvi03420	Nucleotide excision repair	3
vvi03430	Mismatch repair	3
vvi03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00561	Glycerolipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03420	Nucleotide excision repair	3
ppo03030	DNA replication	2
ppo03410	Base excision repair	2
ppo03430	Mismatch repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03082	ATP-dependent chromatin remodeling	2
ghi03083	Polycomb repressive complex	2
ghi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03082	ATP-dependent chromatin remodeling	2
ghi03083	Polycomb repressive complex	2
ghi04120	Ubiquitin mediated proteolysis	2
ghi00190	Oxidative phosphorylation	2
ghi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03022	Basal transcription factors	3
bna03420	Nucleotide excision repair	3
bna03008	Ribosome biogenesis in eukaryotes	2
bna03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03022	Basal transcription factors	3
bna03420	Nucleotide excision repair	3
bna03008	Ribosome biogenesis in eukaryotes	2
bna03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03015	mRNA surveillance pathway	4
sot03040	Spliceosome	4
sot03013	Nucleocytoplasmic transport	3
sot03020	RNA polymerase	2
sot03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00240	Pyrimidine metabolism	2
nta01232	Nucleotide metabolism	2
nta03050	Proteasome	2
nta03082	ATP-dependent chromatin remodeling	2
nta03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00240	Pyrimidine metabolism	2
nta01232	Nucleotide metabolism	2
nta03050	Proteasome	2
nta03082	ATP-dependent chromatin remodeling	2
nta03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03030	DNA replication	6
cre03420	Nucleotide excision repair	4
cre03410	Base excision repair	3
cre03430	Mismatch repair	3

Expression

Expression pattern

Entrez Gene ID^*

8059878

103631912

103653429

101027138

4342292

123052913

123105394

123114092

123453151

123426312

123453149

100836800

829875

100789496

100776465

101257719

103864825

103835010

100248980

7480483

7473125

11413488

107958535

107911997

121215281

125584444

106389824

106434309

102603212

102619438

107826679

107824241

5720917

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Species	sbi	zma	osa	tae	hvu	bdi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	1	3	1	3	3	1	1	2	1	2	1	2	1	3	3	1	1	2	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 8059878 (sbi-r.1 coexpression data)

Top 50 enrichment test to 8059878 (sbi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**