ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
sbi-r.1	8062787	peptidyl-prolyl cis-trans isomerase
sbi-r.1	8068260	peptidyl-prolyl cis-trans isomerase
sbi-r.1	8062274	peptidyl-prolyl cis-trans isomerase CYP19-3
sbi-r.1	8060736	peptidyl-prolyl cis-trans isomerase CYP63
zma-u.5	100274576	uncharacterized LOC100274576
zma-u.5	100282750	peptidyl-prolyl cis-trans isomerase
zma-u.5	100283115	uncharacterized LOC100283115
osa-u.5	4328121	peptidyl-prolyl cis-trans isomerase
osa-u.5	4328668	peptidyl-prolyl cis-trans isomerase CYP95
osa-u.5	4342555	peptidyl-prolyl cis-trans isomerase CYP63
tae-r.2	123135870	peptidyl-prolyl cis-trans isomerase
tae-r.2	123136927	peptidyl-prolyl cis-trans isomerase CYP95
tae-r.2	123143391	peptidyl-prolyl cis-trans isomerase
hvu-r.1	123446794	peptidyl-prolyl cis-trans isomerase-like
hvu-r.1	123426151	peptidyl-prolyl cis-trans isomerase CYP63-like
hvu-r.1	123402860	peptidyl-prolyl cis-trans isomerase
bdi-r.1	100836372	peptidyl-prolyl cis-trans isomerase CYP63
bdi-r.1	100834362	peptidyl-prolyl cis-trans isomerase CYP19-3
bdi-r.1	100832657	peptidyl-prolyl cis-trans isomerase CYP95
ath-u.5	ROC3	rotamase CYP 3
ath-u.5	ROC1	rotamase CYP 1
ath-u.5	ROC5	rotamase cyclophilin 5
gma-u.5	CYP7	peptidyl-prolyl cis-trans isomerase CYP7
gma-u.5	CYP36	peptidyl-prolyl cis-trans isomerase CYP36
gma-u.5	CYP43	peptidyl-prolyl cis-trans isomerase CYP43
sly-u.5	101254541	peptidyl-prolyl cis-trans isomerase
sly-u.5	101251734	peptidyl-prolyl cis-trans isomerase CYP19-2
sly-u.5	CyP	cyclophilin
bra-r.6	103837773	peptidyl-prolyl cis-trans isomerase
bra-r.6	103850950	peptidyl-prolyl cis-trans isomerase CYP95
bra-r.6	103841514	peptidyl-prolyl cis-trans isomerase CYP19-3
vvi-u.5	100267506	peptidyl-prolyl cis-trans isomerase-like
vvi-u.5	100264514	peptidyl-prolyl cis-trans isomerase CYP95
vvi-u.5	100261571	peptidyl-prolyl cis-trans isomerase CYP19-3
ppo-u.5	7477866	peptidyl-prolyl cis-trans isomerase 1
ppo-u.5	7472146	peptidyl-prolyl cis-trans isomerase 1
ppo-u.5	7462976	peptidyl-prolyl cis-trans isomerase CYP95
mtr-u.5	25499177	peptidyl-prolyl cis-trans isomerase CYP63
mtr-u.5	11444406	peptidyl-prolyl cis-trans isomerase 1
mtr-u.5	11432469	peptidyl-prolyl cis-trans isomerase CYP95
ghi-r.1	107949078	peptidyl-prolyl cis-trans isomerase 1
ghi-r.1	107928818	peptidyl-prolyl cis-trans isomerase 1
ghi-r.1	107922329	peptidyl-prolyl cis-trans isomerase
bna-r.1	111208740	peptidyl-prolyl cis-trans isomerase CYP19-3
bna-r.1	125604010	peptidyl-prolyl cis-trans isomerase CYP18-3
bna-r.1	111203325	peptidyl-prolyl cis-trans isomerase CYP95-like
sot-r.1	102605090	peptidyl-prolyl cis-trans isomerase CYP19-3-like
sot-r.1	102586427	peptidyl-prolyl cis-trans isomerase-like
sot-r.1	102600807	peptidyl-prolyl cis-trans isomerase-like
cit-r.1	102610500	peptidyl-prolyl cis-trans isomerase CYP95
cit-r.1	CYP	peptidyl-prolyl cis-trans isomerase-like
cit-r.1	102615646	peptidyl-prolyl cis-trans isomerase CYP19-3
nta-r.1	107792692	peptidyl-prolyl cis-trans isomerase
nta-r.1	107795870	peptidyl-prolyl cis-trans isomerase-like
nta-r.1	107801011	peptidyl-prolyl cis-trans isomerase
cre-r.1	CHLRE_10g417500v5	uncharacterized protein
cre-r.1	CHLRE_01g002300v5	uncharacterized protein
cre-r.1	CHLRE_13g588100v5	uncharacterized protein

Top 50 coexpressed genes to 8062787 (sbi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 8062787 (sbi-r.1 coexpression data)

CoexMap"8062787"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0000413 [list] [network] protein peptidyl-prolyl isomerization	(37 genes)	IEA
GO:0006457 [list] [network] protein folding	(184 genes)	IEA

GO CC

GO MF

GO:0003755 [list] [network] peptidyl-prolyl cis-trans isomerase activity

(59 genes)

IEA

Protein

XP_002464727.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 7, chlo 2

(predict for XP_002464727.1)

Subcellular
localization
TargetP

other 4

(predict for XP_002464727.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sbi-r.1 for 8062787	sbi-r.1 for 8068260	sbi-r.1 for 8062274	sbi-r.1 for 8060736	zma-u.5 for 100274576	zma-u.5 for 100282750	zma-u.5 for 100283115	osa-u.5 for 4328121	osa-u.5 for 4328668	osa-u.5 for 4342555	tae-r.2 for 123135870	tae-r.2 for 123136927	tae-r.2 for 123143391	hvu-r.1 for 123446794	hvu-r.1 for 123426151	hvu-r.1 for 123402860	bdi-r.1 for 100836372	bdi-r.1 for 100834362	bdi-r.1 for 100832657	ath-u.5 for ROC3	ath-u.5 for ROC1	ath-u.5 for ROC5	gma-u.5 for CYP7	gma-u.5 for CYP36	gma-u.5 for CYP43	sly-u.5 for 101254541	sly-u.5 for 101251734	sly-u.5 for CyP	bra-r.6 for 103837773	bra-r.6 for 103850950	bra-r.6 for 103841514	vvi-u.5 for 100267506	vvi-u.5 for 100264514	vvi-u.5 for 100261571	ppo-u.5 for 7477866	ppo-u.5 for 7472146	ppo-u.5 for 7462976	mtr-u.5 for 25499177	mtr-u.5 for 11444406	mtr-u.5 for 11432469	ghi-r.1 for 107949078	ghi-r.1 for 107928818	ghi-r.1 for 107922329	bna-r.1 for 111208740	bna-r.1 for 125604010	bna-r.1 for 111203325	sot-r.1 for 102605090	sot-r.1 for 102586427	sot-r.1 for 102600807	cit-r.1 for 102610500	cit-r.1 for CYP	cit-r.1 for 102615646	nta-r.1 for 107792692	nta-r.1 for 107795870	nta-r.1 for 107801011	cre-r.1 for CHLRE_10g417500v5	cre-r.1 for CHLRE_01g002300v5	cre-r.1 for CHLRE_13g588100v5

Ortholog

Ortholog ID: 517

Species

sbi

zma

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

ROC3

ROC1

AT2G21130

CYP43

CYP27

CYP1

CyP

Function^*

peptidyl-prolyl cis-trans isomerase CYP19-3

peptidyl-prolyl cis-trans isomerase CYP63

peptidyl-prolyl cis-trans isomerase CYP95

uncharacterized LOC100274576

peptidyl-prolyl cis-trans isomerase

uncharacterized LOC100384625

peptidyl-prolyl cis-trans isomerase

peptidyl-prolyl cis-trans isomerase CYP63

peptidyl-prolyl cis-trans isomerase CYP19-3

peptidyl-prolyl cis-trans isomerase

peptidyl-prolyl cis-trans isomerase-like

peptidyl-prolyl cis-trans isomerase CYP63-like

peptidyl-prolyl cis-trans isomerase CYP95

peptidyl-prolyl cis-trans isomerase CYP63

peptidyl-prolyl cis-trans isomerase

rotamase CYP 3

rotamase CYP 1

Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein

peptidyl-prolyl cis-trans isomerase CYP43

peptidyl-prolyl cis-trans isomerase CYP27

peptidyl-prolyl cis-trans isomerase 1

peptidyl-prolyl cis-trans isomerase

peptidyl-prolyl cis-trans isomerase CYP19-2

cyclophilin

peptidyl-prolyl cis-trans isomerase

peptidyl-prolyl cis-trans isomerase CYP18-3

peptidyl-prolyl cis-trans isomerase CYP95

peptidyl-prolyl cis-trans isomerase CYP19-3

peptidyl-prolyl cis-trans isomerase-like

peptidyl-prolyl cis-trans isomerase 1

peptidyl-prolyl cis-trans isomerase CYP95

peptidyl-prolyl cis-trans isomerase

peptidyl-prolyl cis-trans isomerase CYP63

peptidyl-prolyl cis-trans isomerase CYP95

peptidyl-prolyl cis-trans isomerase 1

peptidyl-prolyl cis-trans isomerase CYP95

peptidyl-prolyl cis-trans isomerase CYP19-3

peptidyl-prolyl cis-trans isomerase-like

peptidyl-prolyl cis-trans isomerase CYP19-3-like

peptidyl-prolyl cis-trans isomerase-like

peptidyl-prolyl cis-trans isomerase CYP95

peptidyl-prolyl cis-trans isomerase CYP19-3

peptidyl-prolyl cis-trans isomerase CYP63

peptidyl-prolyl cis-trans isomerase

peptidyl-prolyl cis-trans isomerase-like

peptidyl-prolyl cis-trans isomerase CYP19-3

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	3
sbi04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03008	Ribosome biogenesis in eukaryotes	4
sbi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00620	Pyruvate metabolism	2
osa03008	Ribosome biogenesis in eukaryotes	2
osa03013	Nucleocytoplasmic transport	2
osa03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03008	Ribosome biogenesis in eukaryotes	3
osa00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03010	Ribosome	10
osa04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	11

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	10
tae00400	Phenylalanine, tyrosine and tryptophan biosynthesis	3
tae01230	Biosynthesis of amino acids	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03030	DNA replication	2
hvu03430	Mismatch repair	2
hvu03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03008	Ribosome biogenesis in eukaryotes	3
hvu00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03013	Nucleocytoplasmic transport	3
hvu03015	mRNA surveillance pathway	3
hvu03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03010	Ribosome	2
bdi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00190	Oxidative phosphorylation	7
bdi04145	Phagosome	5
bdi04142	Lysosome	4
bdi03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04075	Plant hormone signal transduction	7
ath00190	Oxidative phosphorylation	2
ath04016	MAPK signaling pathway - plant	2
ath04070	Phosphatidylinositol signaling system	2
ath04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04712	Circadian rhythm - plant	2
ath00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03015	mRNA surveillance pathway	5
gma03250	Viral life cycle - HIV-1	4
gma03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00710	Carbon fixation by Calvin cycle	8
gma01200	Carbon metabolism	8
gma00020	Citrate cycle (TCA cycle)	4
gma00270	Cysteine and methionine metabolism	4
gma00566	Sulfoquinovose metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	9
sly04141	Protein processing in endoplasmic reticulum	3
sly03040	Spliceosome	2
sly04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	3
sly03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00620	Pyruvate metabolism	2
bra00710	Carbon fixation by Calvin cycle	2
bra01200	Carbon metabolism	2
bra00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03083	Polycomb repressive complex	2
bra04120	Ubiquitin mediated proteolysis	2
bra04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	3
vvi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	10

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00190	Oxidative phosphorylation	2
vvi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00190	Oxidative phosphorylation	7
ppo00020	Citrate cycle (TCA cycle)	3
ppo01200	Carbon metabolism	3
ppo00270	Cysteine and methionine metabolism	2
ppo00566	Sulfoquinovose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00052	Galactose metabolism	2
ppo03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03008	Ribosome biogenesis in eukaryotes	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00620	Pyruvate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03008	Ribosome biogenesis in eukaryotes	4
bna03013	Nucleocytoplasmic transport	4
bna03250	Viral life cycle - HIV-1	4
bna00592	alpha-Linolenic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03008	Ribosome biogenesis in eukaryotes	4
sot03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00190	Oxidative phosphorylation	5
sot04145	Phagosome	4
sot04142	Lysosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00561	Glycerolipid metabolism	2
sot00750	Vitamin B6 metabolism	2
sot01240	Biosynthesis of cofactors	2
sot00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00730	Thiamine metabolism	2
nta01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00561	Glycerolipid metabolism	4
nta00566	Sulfoquinovose metabolism	3
nta00564	Glycerophospholipid metabolism	2
nta00565	Ether lipid metabolism	2
nta04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	6
nta03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre04141	Protein processing in endoplasmic reticulum	4
cre03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre01200	Carbon metabolism	3
cre00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre01240	Biosynthesis of cofactors	4
cre00750	Vitamin B6 metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

8062274

8060736

110434624

100274576

100282750

100384625

4328121

4342555

4347920

123087435

123090470

123095555

123446794

123426151

123403267

100836372

100837401

100844579

816161

830029

816648

100800303

100791082

100777759

101254541

101251734

100736432

103837773

103828088

100264514

100261571

100247119

7472146

7462976

7490647

25499177

11432469

11422523

107949078

107953678

107953677

111208740

106368109

106347045

102605090

102586427

102600807

102610500

102615646

102614842

107792692

107807631

107829132

5728346

5719445

5715873

The preparation time of this page was 0.3 [sec].


Species	sbi	zma	osa	tae	hvu	bdi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	4	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3	3

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 8062787 (sbi-r.1 coexpression data)

Top 50 enrichment test to 8062787 (sbi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**