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Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   8063274   uncharacterized LOC8063274 
 zma-u.5   109939175   uncharacterized LOC109939175 
 zma-u.5   100280798   uncharacterized LOC100280798 
 zma-u.5   109943977   DNA-directed RNA polymerase III subunit RPC9-like 
 osa-u.5   4352240   uncharacterized LOC4352240 
 tae-r.2   123185900   uncharacterized LOC123185900 
 tae-r.2   123041851   uncharacterized LOC123041851 
 hvu-r.1   123430709   uncharacterized LOC123430709 
 bdi-r.1   100837108   uncharacterized LOC100837108 
 ath-u.5   AT3G28956   RNA polymerase II, Rpb4, core protein 
 ath-u.5   AT5G62950   RNA polymerase II, Rpb4, core protein 
 sly-u.5   101258513   uncharacterized LOC101258513 
 bra-r.6   103855032   uncharacterized LOC103855032 
 vvi-u.5   100259966   uncharacterized LOC100259966 
 ppo-u.5   7466866   uncharacterized LOC7466866 
 mtr-u.5   120575911   DNA-directed RNA polymerase III subunit RPC9 
 mtr-u.5   120575912   DNA-directed RNA polymerase III subunit RPC9 
 mtr-u.5   120575910   DNA-directed RNA polymerase III subunit RPC9 
 ghi-r.1   107927637   DNA-directed RNA polymerase III subunit RPC9 
 ghi-r.1   107941606   DNA-directed RNA polymerase III subunit RPC9 
 bna-r.1   125574923   uncharacterized LOC125574923 
 bna-r.1   106378883   uncharacterized LOC106378883 
 sot-r.1   102587541   uncharacterized LOC102587541 
 cit-r.1   102623208   uncharacterized LOC102623208 
 nta-r.1   107812661   uncharacterized LOC107812661 
 nta-r.1   107817299   uncharacterized LOC107817299 
 cre-r.1   CHLRE_13g564550v5   uncharacterized protein 

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Top 50 coexpressed genes to 8063274 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 8063274 (sbi-r.1 coexpression data)

CoexMap"8063274"


sbiLOC8063274 | Entrez gene ID : 8063274      
Species sbi zma osa tae hvu bdi ath sly bra vvi ppo mtr ghi bna sot cit nta cre gma
Paralog 1 3 1 2 1 1 2 1 1 1 1 3 2 2 1 1 2 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sbi03020 [list] [network] RNA polymerase (56 genes)
GO BP
GO:0006384 [list] [network] transcription initiation at RNA polymerase III promoter  (10 genes)  IEA  
GO CC
GO:0005666 [list] [network] RNA polymerase III complex  (24 genes)  IEA  
GO MF
GO:0000166 [list] [network] nucleotide binding  (2859 genes)  IEA  
Protein XP_002443194.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  mito 4,  chlo_mito 4  (predict for XP_002443194.1)
Subcellular
localization
TargetP
other 6,  scret 4  (predict for XP_002443194.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
8063274
zma-u.5
for
109939175
zma-u.5
for
100280798
zma-u.5
for
109943977
osa-u.5
for
4352240
tae-r.2
for
123185900
tae-r.2
for
123041851
hvu-r.1
for
123430709
bdi-r.1
for
100837108
ath-u.5
for
AT3G28956
ath-u.5
for
AT5G62950
sly-u.5
for
101258513
bra-r.6
for
103855032
vvi-u.5
for
100259966
ppo-u.5
for
7466866
mtr-u.5
for
120575911
mtr-u.5
for
120575912
mtr-u.5
for
120575910
ghi-r.1
for
107927637
ghi-r.1
for
107941606
bna-r.1
for
125574923
bna-r.1
for
106378883
sot-r.1
for
102587541
cit-r.1
for
102623208
nta-r.1
for
107812661
nta-r.1
for
107817299
cre-r.1
for
CHLRE_13g564550v5


Ortholog ID: 3938
Species sbi zma zma zma osa tae tae hvu bdi ath ath sly bra vvi ppo mtr mtr mtr ghi ghi bna sot cit nta nta cre
Symbol LOC8063274 LOC100280798 LOC109943977 LOC109943978 LOC4352240 LOC123041851 LOC123049813 LOC123430709 LOC100837108 AT3G28956 AT5G62950 LOC101258513 LOC103855032 LOC100259966 LOC7466866 LOC120576153 LOC25496379 LOC25496377 LOC107927637 LOC107941606 LOC125574923 LOC102587541 LOC102623208 LOC107812661 LOC107817299 CHLRE_13g564550v5
Function* uncharacterized LOC8063274 uncharacterized LOC100280798 DNA-directed RNA polymerase III subunit RPC9-like uncharacterized LOC109943978 uncharacterized LOC4352240 uncharacterized LOC123041851 uncharacterized LOC123049813 uncharacterized LOC123430709 uncharacterized LOC100837108 RNA polymerase II, Rpb4, core protein RNA polymerase II, Rpb4, core protein uncharacterized LOC101258513 uncharacterized LOC103855032 uncharacterized LOC100259966 uncharacterized LOC7466866 DNA-directed RNA polymerase III subunit RPC9 uncharacterized LOC25496379 DNA-directed RNA polymerase III subunit RPC9 DNA-directed RNA polymerase III subunit RPC9 DNA-directed RNA polymerase III subunit RPC9 uncharacterized LOC125574923 uncharacterized LOC102587541 uncharacterized LOC102623208 uncharacterized LOC107812661 uncharacterized LOC107817299 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03020 RNA polymerase 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03020 RNA polymerase 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03020 RNA polymerase 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 3
tae03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 4
tae03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03018 RNA degradation 2
bdi03008 Ribosome biogenesis in eukaryotes 2
bdi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01240 Biosynthesis of cofactors 3
ath04144 Endocytosis 2
ath00790 Folate biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04144 Endocytosis 4
ath03008 Ribosome biogenesis in eukaryotes 2
ath03083 Polycomb repressive complex 2
ath04712 Circadian rhythm - plant 2
ath04517 IgSF CAM signaling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03020 RNA polymerase 2
ppo03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03020 RNA polymerase 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03020 RNA polymerase 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03020 RNA polymerase 6
mtr04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 13
ghi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 14
ghi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 3
bna03030 DNA replication 2
bna03410 Base excision repair 2
bna03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 2
sot03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 4
nta03018 RNA degradation 2
nta03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 4
nta03018 RNA degradation 2
nta03020 RNA polymerase 2
nta03008 Ribosome biogenesis in eukaryotes 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 8063274 100280798 109943977 109943978 4352240 123041851 123049813 123430709 100837108 822534 836415 101258513 103855032 100259966 7466866 120576153 25496379 25496377 107927637 107941606 125574923 102587541 102623208 107812661 107817299 5719024
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