ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
sbi-r.1	8063317	ribonuclease 3
sbi-r.1	8077825	ribonuclease 1
sbi-r.1	8063515	ribonuclease 1
zma-u.5	100284932	ribonuclease 1
zma-u.5	100192110	uncharacterized LOC100192110
osa-u.5	4347708	ribonuclease 3
osa-u.5	4345656	extracellular ribonuclease LE
tae-r.2	123041280	ribonuclease 3
tae-r.2	123121102	ribonuclease 1
tae-r.2	123051992	ribonuclease 1
hvu-r.1	123421387	ribonuclease 3-like
hvu-r.1	123430111	ribonuclease 3-like
hvu-r.1	123421397	ribonuclease 3-like
bdi-r.1	100838612	ribonuclease 1
bdi-r.1	100833857	ribonuclease 1
ath-u.5	RNS3	ribonuclease 3
ath-u.5	AT1G14220	Ribonuclease T2 family protein
ath-u.5	AT1G14210	Ribonuclease T2 family protein
gma-u.5	100527255	uncharacterized LOC100527255
gma-u.5	100782011	ribonuclease 1
sly-u.5	rnalx	intracellular ribonuclease LX
bra-r.6	103875452	ribonuclease 1
bra-r.6	103829206	ribonuclease 3
bra-r.6	103853966	ribonuclease 1
vvi-u.5	100249919	extracellular ribonuclease LE
ppo-u.5	7460690	ribonuclease 1
ppo-u.5	7460691	ribonuclease 3
mtr-u.5	25494640	ribonuclease 3
mtr-u.5	11422141	ribonuclease 1
ghi-r.1	107940648	ribonuclease 3
ghi-r.1	107918619	ribonuclease 3
bna-r.1	106365361	ribonuclease 3
bna-r.1	106380914	ribonuclease 1-like
bna-r.1	111203334	ribonuclease 1
sot-r.1	102600839	intracellular ribonuclease LX
sot-r.1	102600511	extracellular ribonuclease LE
sot-r.1	102592540	intracellular ribonuclease LX-like
cit-r.1	102615337	extracellular ribonuclease LE-like
cit-r.1	102615052	ribonuclease 3
nta-r.1	107759406	intracellular ribonuclease LX
nta-r.1	107775065	intracellular ribonuclease LX-like
cre-r.1	CHLRE_06g306550v5	uncharacterized protein

Top 50 coexpressed genes to 8063317 (sbi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 8063317 (sbi-r.1 coexpression data)

CoexMap"8063317"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0006401 [list] [network] RNA catabolic process

(86 genes)

IEA

GO CC

GO:0005576 [list] [network] extracellular region

(344 genes)

IEA

GO MF

GO:0033897 [list] [network] ribonuclease T2 activity	(6 genes)	IEA
GO:0003723 [list] [network] RNA binding	(1243 genes)	IEA

Protein

XP_002462741.1 [sequence] [blastp]

Subcellular
localization
wolf

extr 3, chlo 2, vacu 2, cyto 1, nucl 1, plas 1, nucl_plas 1, cyto_pero 1, cyto_E.R. 1

(predict for XP_002462741.1)

Subcellular
localization
TargetP

scret 9

(predict for XP_002462741.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sbi-r.1 for 8063317	sbi-r.1 for 8077825	sbi-r.1 for 8063515	zma-u.5 for 100284932	zma-u.5 for 100192110	osa-u.5 for 4347708	osa-u.5 for 4345656	tae-r.2 for 123041280	tae-r.2 for 123121102	tae-r.2 for 123051992	hvu-r.1 for 123421387	hvu-r.1 for 123430111	hvu-r.1 for 123421397	bdi-r.1 for 100838612	bdi-r.1 for 100833857	ath-u.5 for RNS3	ath-u.5 for AT1G14220	ath-u.5 for AT1G14210	gma-u.5 for 100527255	gma-u.5 for 100782011	sly-u.5 for rnalx	bra-r.6 for 103875452	bra-r.6 for 103829206	bra-r.6 for 103853966	vvi-u.5 for 100249919	ppo-u.5 for 7460690	ppo-u.5 for 7460691	mtr-u.5 for 25494640	mtr-u.5 for 11422141	ghi-r.1 for 107940648	ghi-r.1 for 107918619	bna-r.1 for 106365361	bna-r.1 for 106380914	bna-r.1 for 111203334	sot-r.1 for 102600839	sot-r.1 for 102600511	sot-r.1 for 102592540	cit-r.1 for 102615337	cit-r.1 for 102615052	nta-r.1 for 107759406	nta-r.1 for 107775065	cre-r.1 for CHLRE_06g306550v5

Ortholog

Ortholog ID: 892

Species

sbi

zma

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

RNS3

RNALE

Function^*

ribonuclease 3

ribonuclease 1

uncharacterized LOC100192110

ribonuclease 3

extracellular ribonuclease LE

ribonuclease 3

ribonuclease 1

ribonuclease 3-like

ribonuclease 1-like

ribonuclease 1

ribonuclease 3

Ribonuclease T2 family protein

uncharacterized LOC100527255

ribonuclease 1

putative ribonuclease T2

ribonuclease T2

ribonuclease 1

ribonuclease 3

extracellular ribonuclease LE

ribonuclease 1

ribonuclease 3

ribonuclease 1

ribonuclease 3

ribonuclease 1

ribonuclease 1-like

ribonuclease 1

extracellular ribonuclease LE

intracellular ribonuclease LX-like

extracellular ribonuclease LE-like

ribonuclease 3

intracellular ribonuclease LX

extracellular ribonuclease LE-like

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00906	Carotenoid biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00562	Inositol phosphate metabolism	2
sbi00564	Glycerophospholipid metabolism	2
sbi00565	Ether lipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00940	Phenylpropanoid biosynthesis	6
sbi00945	Stilbenoid, diarylheptanoid and gingerol biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00940	Phenylpropanoid biosynthesis	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00230	Purine metabolism	2
osa00240	Pyrimidine metabolism	2
osa01232	Nucleotide metabolism	2
osa00591	Linoleic acid metabolism	2
osa00592	alpha-Linolenic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04626	Plant-pathogen interaction	2
hvu00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04016	MAPK signaling pathway - plant	4
ath04075	Plant hormone signal transduction	4
ath00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00940	Phenylpropanoid biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00740	Riboflavin metabolism	2
gma04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00073	Cutin, suberine and wax biosynthesis	2
bra00062	Fatty acid elongation	2
bra01212	Fatty acid metabolism	2
bra04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00520	Amino sugar and nucleotide sugar metabolism	3
ppo04016	MAPK signaling pathway - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00051	Fructose and mannose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00040	Pentose and glucuronate interconversions	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00040	Pentose and glucuronate interconversions	2
mtr00940	Phenylpropanoid biosynthesis	2
mtr00562	Inositol phosphate metabolism	2
mtr00564	Glycerophospholipid metabolism	2
mtr00565	Ether lipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00860	Porphyrin metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00740	Riboflavin metabolism	2
ghi04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00620	Pyruvate metabolism	6
bna00640	Propanoate metabolism	6
bna01200	Carbon metabolism	6
bna00061	Fatty acid biosynthesis	4
bna01212	Fatty acid metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04626	Plant-pathogen interaction	3
sot04016	MAPK signaling pathway - plant	2
sot04075	Plant hormone signal transduction	2
sot04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00940	Phenylpropanoid biosynthesis	3
sot04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00073	Cutin, suberine and wax biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00460	Cyanoamino acid metabolism	2
cit00500	Starch and sucrose metabolism	2
cit00999	Biosynthesis of various plant secondary metabolites	2
cit00073	Cutin, suberine and wax biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00999	Biosynthesis of various plant secondary metabolites	3
nta00460	Cyanoamino acid metabolism	2
nta00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00561	Glycerolipid metabolism	4
nta00566	Sulfoquinovose metabolism	4
nta00520	Amino sugar and nucleotide sugar metabolism	2
nta01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00561	Glycerolipid metabolism	4
nta00566	Sulfoquinovose metabolism	4
nta00240	Pyrimidine metabolism	2
nta01232	Nucleotide metabolism	2
nta01240	Biosynthesis of cofactors	2

Expression

Expression pattern

Entrez Gene ID^*

8063317

8077825

8063515

100284932

100192110

4347708

4345656

123041280

123048962

123421387

123425196

100838612

100833857

839225

837983

837982

100527255

100782011

100306447

544098

103875452

103853966

103842986

100249919

7460690

7460691

25494640

11422141

11412791

107940648

107918619

107940649

111203334

106415884

106352194

102600511

102592540

102615337

102615052

107759406

107811341

107813432

5716875

The preparation time of this page was 0.3 [sec].


Species	sbi	zma	osa	tae	hvu	bdi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	3	2	2	3	3	2	3	2	1	3	1	2	2	2	3	3	2	2	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 8063317 (sbi-r.1 coexpression data)

Top 50 enrichment test to 8063317 (sbi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**