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Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   8066548   RNA polymerase sigma factor SigA1 
 zma-u.5   542081   sigma factor protein 
 osa-u.5   4339778   RNA polymerase sigma factor sigC 
 tae-r.2   123183344   RNA polymerase sigma factor sigC 
 tae-r.2   123149263   RNA polymerase sigma factor sigC 
 tae-r.2   123070406   RNA polymerase sigma factor sigC 
 hvu-r.1   123452471   RNA polymerase sigma factor sigC 
 bdi-r.1   104582577   RNA polymerase sigma factor sigC 
 bdi-r.1   100823148   RNA polymerase sigma factor sigC-like 
 ath-u.5   SIGC   RNApolymerase sigma-subunit C 
 gma-u.5   100802522   RNA polymerase sigma factor sigC 
 sly-u.5   101268893   RNA polymerase sigma factor sigC 
 bra-r.6   103863276   RNA polymerase sigma factor sigC 
 vvi-u.5   100252651   RNA polymerase sigma factor sigC 
 ppo-u.5   7462282   RNA polymerase sigma factor sigC 
 mtr-u.5   11429595   RNA polymerase sigma factor sigC 
 ghi-r.1   107901502   RNA polymerase sigma factor sigC 
 ghi-r.1   107897079   RNA polymerase sigma factor sigC 
 bna-r.1   106380601   RNA polymerase sigma factor sigC 
 bna-r.1   106445536   RNA polymerase sigma factor sigC-like 
 sot-r.1   102599083   RNA polymerase sigma factor sigC 
 cit-r.1   102616677   RNA polymerase sigma factor sigC 
 nta-r.1   107808013   RNA polymerase sigma factor sigC-like 
 nta-r.1   107803694   RNA polymerase sigma factor sigC 

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Top 50 coexpressed genes to 8066548 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 8066548 (sbi-r.1 coexpression data)

CoexMap"8066548"


sbiLOC8066548 | Entrez gene ID : 8066548    
Species sbi zma osa tae hvu bdi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 1 1 1 3 1 2 1 1 1 1 1 1 1 2 2 1 1 2 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006352 [list] [network] DNA-templated transcription initiation  (67 genes)  IEA  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1596 genes)  IEA  
GO CC
GO MF
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1111 genes)  IEA  
Protein XP_002440362.2 [sequence] [blastp]
XP_021302759.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9  (predict for XP_002440362.2)
chlo 9,  nucl 1  (predict for XP_021302759.1)
Subcellular
localization
TargetP
chlo 9  (predict for XP_002440362.2)
chlo 9  (predict for XP_021302759.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
8066548
zma-u.5
for
542081
osa-u.5
for
4339778
tae-r.2
for
123183344
tae-r.2
for
123149263
tae-r.2
for
123070406
hvu-r.1
for
123452471
bdi-r.1
for
104582577
bdi-r.1
for
100823148
ath-u.5
for
SIGC
gma-u.5
for
100802522
sly-u.5
for
101268893
bra-r.6
for
103863276
vvi-u.5
for
100252651
ppo-u.5
for
7462282
mtr-u.5
for
11429595
ghi-r.1
for
107901502
ghi-r.1
for
107897079
bna-r.1
for
106380601
bna-r.1
for
106445536
sot-r.1
for
102599083
cit-r.1
for
102616677
nta-r.1
for
107808013
nta-r.1
for
107803694


Ortholog ID: 10821
Species sbi zma osa tae tae tae hvu bdi bdi ath gma sly bra vvi ppo mtr ghi ghi bna bna sot cit nta nta
Symbol LOC8066548 LOC542081 LOC4339778 LOC123183344 LOC123149263 LOC123070406 LOC123452471 LOC104582577 LOC100823148 SIGC LOC100802522 LOC101268893 LOC103863276 LOC100252651 LOC7462282 LOC11429595 LOC107901502 LOC107897079 LOC106380601 LOC106445536 LOC102599083 LOC102616677 LOC107808013 LOC107803694
Function* RNA polymerase sigma factor SigA1 sigma factor protein RNA polymerase sigma factor sigC RNA polymerase sigma factor sigC RNA polymerase sigma factor sigC RNA polymerase sigma factor sigC RNA polymerase sigma factor sigC RNA polymerase sigma factor sigC RNA polymerase sigma factor sigC-like RNApolymerase sigma-subunit C RNA polymerase sigma factor sigC RNA polymerase sigma factor sigC RNA polymerase sigma factor sigC RNA polymerase sigma factor sigC RNA polymerase sigma factor sigC RNA polymerase sigma factor sigC RNA polymerase sigma factor sigC RNA polymerase sigma factor sigC RNA polymerase sigma factor sigC RNA polymerase sigma factor sigC-like RNA polymerase sigma factor sigC RNA polymerase sigma factor sigC RNA polymerase sigma factor sigC-like RNA polymerase sigma factor sigC
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00730 Thiamine metabolism 2
sbi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04712 Circadian rhythm - plant 2
osa00730 Thiamine metabolism 2
osa01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00730 Thiamine metabolism 6
tae01240 Biosynthesis of cofactors 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00730 Thiamine metabolism 3
tae01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00053 Ascorbate and aldarate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00900 Terpenoid backbone biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00900 Terpenoid backbone biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 2
nta00230 Purine metabolism 2
nta00051 Fructose and mannose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 2
nta00230 Purine metabolism 2
nta00051 Fructose and mannose metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 8066548 542081 4339778 123183344 123149263 123070406 123452471 104582577 100823148 824559 100802522 101268893 103863276 100252651 7462282 11429595 107901502 107897079 106380601 106445536 102599083 102616677 107808013 107803694
The preparation time of this page was 2.4 [sec].