ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
sbi-r.1	8066552	RGG repeats nuclear RNA binding protein A
sbi-r.1	8082208	RGG repeats nuclear RNA binding protein A
sbi-r.1	8059196	RGG repeats nuclear RNA binding protein C
sbi-r.1	8068975	RGG repeats nuclear RNA binding protein A
zma-u.5	103651256	RGG repeats nuclear RNA binding protein C
zma-u.5	100282553	RGG repeats nuclear RNA binding protein
zma-u.5	100282188	RGG repeats nuclear RNA binding protein
osa-u.5	4339782	RGG repeats nuclear RNA binding protein A
osa-u.5	4339423	RGG repeats nuclear RNA binding protein A
osa-u.5	4324661	RGG repeats nuclear RNA binding protein A
tae-r.2	123070458	RGG repeats nuclear RNA binding protein A
tae-r.2	123062033	RGG repeats nuclear RNA binding protein A
tae-r.2	123064581	RGG repeats nuclear RNA binding protein A
hvu-r.1	123452521	RGG repeats nuclear RNA binding protein A-like
hvu-r.1	123448634	RGG repeats nuclear RNA binding protein A-like
hvu-r.1	123444307	RGG repeats nuclear RNA binding protein A-like
bdi-r.1	100831128	RGG repeats nuclear RNA binding protein A
bdi-r.1	100837480	RGG repeats nuclear RNA binding protein A
bdi-r.1	100843766	RGG repeats nuclear RNA binding protein A
ath-u.5	AT4G16830	Hyaluronan / mRNA binding family
ath-u.5	AT4G17520	Hyaluronan / mRNA binding family
ath-u.5	AT5G47210	Hyaluronan / mRNA binding family
gma-u.5	100791259	RGG repeats nuclear RNA binding protein A
gma-u.5	100807657	uncharacterized LOC100807657
gma-u.5	100814825	RGG repeats nuclear RNA binding protein A
sly-u.5	101255921	plasminogen activator inhibitor 1 RNA-binding protein-like
sly-u.5	101256310	RGG repeats nuclear RNA binding protein A
sly-u.5	101260416	RGG repeats nuclear RNA binding protein A-like
bra-r.6	103839539	RGG repeats nuclear RNA binding protein C
bra-r.6	103827661	RGG repeats nuclear RNA binding protein C
vvi-u.5	100259885	RGG repeats nuclear RNA binding protein A
vvi-u.5	100265608	RGG repeats nuclear RNA binding protein A
ppo-u.5	18094574	RGG repeats nuclear RNA binding protein A
ppo-u.5	7461996	RGG repeats nuclear RNA binding protein A
ppo-u.5	7453918	RGG repeats nuclear RNA binding protein A
mtr-u.5	11438402	RGG repeats nuclear RNA binding protein A
mtr-u.5	25500060	RGG repeats nuclear RNA binding protein A
ghi-r.1	107939709	RGG repeats nuclear RNA binding protein A
ghi-r.1	107937442	RGG repeats nuclear RNA binding protein A
ghi-r.1	107929675	RGG repeats nuclear RNA binding protein A
bna-r.1	106411083	RGG repeats nuclear RNA binding protein C
bna-r.1	106400793	RGG repeats nuclear RNA binding protein C-like
bna-r.1	106400693	RGG repeats nuclear RNA binding protein C
sot-r.1	107057653	plasminogen activator inhibitor 1 RNA-binding protein-like
sot-r.1	102590612	plasminogen activator inhibitor 1 RNA-binding protein-like
sot-r.1	RGGA	nuclear RNA binding protein
cit-r.1	102609479	RGG repeats nuclear RNA binding protein A
nta-r.1	107782412	plasminogen activator inhibitor 1 RNA-binding protein-like
nta-r.1	107776241	RGG repeats nuclear RNA binding protein A-like
nta-r.1	107787377	RGG repeats nuclear RNA binding protein A-like
cre-r.1	CHLRE_09g393358v5	uncharacterized protein

Top 50 coexpressed genes to 8066552 (sbi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 8066552 (sbi-r.1 coexpression data)

CoexMap"8066552"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0005634 [list] [network] nucleus	(2977 genes)	IEA
GO:0005737 [list] [network] cytoplasm	(4816 genes)	IEA

GO MF

GO:0003723 [list] [network] RNA binding

(1243 genes)

IEA

Protein

XP_002440366.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 5, cyto 2, mito 2

(predict for XP_002440366.1)

Subcellular
localization
TargetP

other 7

(predict for XP_002440366.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sbi-r.1 for 8066552	sbi-r.1 for 8082208	sbi-r.1 for 8059196	sbi-r.1 for 8068975	zma-u.5 for 103651256	zma-u.5 for 100282553	zma-u.5 for 100282188	osa-u.5 for 4339782	osa-u.5 for 4339423	osa-u.5 for 4324661	tae-r.2 for 123070458	tae-r.2 for 123062033	tae-r.2 for 123064581	hvu-r.1 for 123452521	hvu-r.1 for 123448634	hvu-r.1 for 123444307	bdi-r.1 for 100831128	bdi-r.1 for 100837480	bdi-r.1 for 100843766	ath-u.5 for AT4G16830	ath-u.5 for AT4G17520	ath-u.5 for AT5G47210	gma-u.5 for 100791259	gma-u.5 for 100807657	gma-u.5 for 100814825	sly-u.5 for 101255921	sly-u.5 for 101256310	sly-u.5 for 101260416	bra-r.6 for 103839539	bra-r.6 for 103827661	vvi-u.5 for 100259885	vvi-u.5 for 100265608	ppo-u.5 for 18094574	ppo-u.5 for 7461996	ppo-u.5 for 7453918	mtr-u.5 for 11438402	mtr-u.5 for 25500060	ghi-r.1 for 107939709	ghi-r.1 for 107937442	ghi-r.1 for 107929675	bna-r.1 for 106411083	bna-r.1 for 106400793	bna-r.1 for 106400693	sot-r.1 for 107057653	sot-r.1 for 102590612	sot-r.1 for RGGA	cit-r.1 for 102609479	nta-r.1 for 107782412	nta-r.1 for 107776241	nta-r.1 for 107787377	cre-r.1 for CHLRE_09g393358v5

Ortholog

Ortholog ID: 995

Species

sbi

zma

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

RGGA

Function^*