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Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   8066568   26S proteasome regulatory subunit RPN13 
 osa-u.5   4339809   26S proteasome regulatory subunit RPN13 
 tae-r.2   123182034   26S proteasome regulatory subunit RPN13 
 tae-r.2   123133334   26S proteasome regulatory subunit RPN13 
 tae-r.2   123056065   26S proteasome regulatory subunit RPN13 
 hvu-r.1   123442913   26S proteasome regulatory subunit RPN13 
 bdi-r.1   100827907   26S proteasome regulatory subunit RPN13 
 ath-u.5   RPN13   regulatory particle non-ATPase 13 
 gma-u.5   100815281   26S proteasome regulatory subunit RPN13 
 gma-u.5   100799938   26S proteasome regulatory subunit RPN13 
 sly-u.5   101258384   26S proteasome regulatory subunit RPN13 
 bra-r.6   103858347   26S proteasome regulatory subunit RPN13 
 vvi-u.5   100250036   26S proteasome regulatory subunit RPN13 
 ppo-u.5   7485521   26S proteasome regulatory subunit RPN13 
 mtr-u.5   11435925   26S proteasome regulatory subunit RPN13 
 ghi-r.1   121220192   26S proteasome regulatory subunit RPN13 
 ghi-r.1   107926275   26S proteasome regulatory subunit RPN13 
 bna-r.1   106438409   26S proteasome regulatory subunit RPN13 
 bna-r.1   106388388   26S proteasome regulatory subunit RPN13 
 sot-r.1   102591202   26S proteasome regulatory subunit RPN13 
 cit-r.1   102623545   26S proteasome regulatory subunit RPN13 
 nta-r.1   107800592   26S proteasome regulatory subunit RPN13-like 
 nta-r.1   107806049   26S proteasome regulatory subunit RPN13 
 cre-r.1   CHLRE_11g469450v5   uncharacterized protein 

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Top 50 coexpressed genes to 8066568 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 8066568 (sbi-r.1 coexpression data)

CoexMap"8066568"


sbiLOC8066568 | Entrez gene ID : 8066568      
Species sbi osa tae hvu bdi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre zma
Paralog 1 1 3 1 1 1 2 1 1 1 1 1 2 2 1 1 2 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sbi03050 [list] [network] Proteasome (59 genes)
GO BP
GO:0006511 [list] [network] ubiquitin-dependent protein catabolic process  (251 genes)  IEA  
GO CC
GO:0008541 [list] [network] proteasome regulatory particle, lid subcomplex  (11 genes)  IEA  
GO:0005634 [list] [network] nucleus  (2977 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (4816 genes)  IEA  
GO MF
GO:0061133 [list] [network] endopeptidase activator activity  (1 genes)  IEA  
GO:0070628 [list] [network] proteasome binding  (10 genes)  IEA  
GO:0043130 [list] [network] ubiquitin binding  (61 genes)  IEA  
Protein XP_002441642.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  chlo 1,  plas 1,  nucl 1,  mito 1,  extr 1,  cysk 1,  golg 1,  cysk_nucl 1,  E.R._plas 1  (predict for XP_002441642.1)
Subcellular
localization
TargetP
other 9  (predict for XP_002441642.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
8066568
osa-u.5
for
4339809
tae-r.2
for
123182034
tae-r.2
for
123133334
tae-r.2
for
123056065
hvu-r.1
for
123442913
bdi-r.1
for
100827907
ath-u.5
for
RPN13
gma-u.5
for
100815281
gma-u.5
for
100799938
sly-u.5
for
101258384
bra-r.6
for
103858347
vvi-u.5
for
100250036
ppo-u.5
for
7485521
mtr-u.5
for
11435925
ghi-r.1
for
121220192
ghi-r.1
for
107926275
bna-r.1
for
106438409
bna-r.1
for
106388388
sot-r.1
for
102591202
cit-r.1
for
102623545
nta-r.1
for
107800592
nta-r.1
for
107806049
cre-r.1
for
CHLRE_11g469450v5


Ortholog ID: 10678
Species sbi osa tae tae tae hvu bdi ath gma gma sly bra vvi ppo mtr ghi ghi bna bna sot cit nta nta cre
Symbol LOC8066568 LOC4339809 LOC123182034 LOC123133334 LOC123056065 LOC123442913 LOC100827907 RPN13 LOC100815281 LOC100799938 LOC101258384 LOC103858347 LOC100250036 LOC7485521 LOC11435925 LOC121220192 LOC107926275 LOC106438409 LOC106388388 LOC102591202 LOC102623545 LOC107800592 LOC107806049 CHLRE_11g469450v5
Function* 26S proteasome regulatory subunit RPN13 26S proteasome regulatory subunit RPN13 26S proteasome regulatory subunit RPN13 26S proteasome regulatory subunit RPN13 26S proteasome regulatory subunit RPN13 26S proteasome regulatory subunit RPN13 26S proteasome regulatory subunit RPN13 regulatory particle non-ATPase 13 26S proteasome regulatory subunit RPN13 26S proteasome regulatory subunit RPN13 26S proteasome regulatory subunit RPN13 26S proteasome regulatory subunit RPN13 26S proteasome regulatory subunit RPN13 26S proteasome regulatory subunit RPN13 26S proteasome regulatory subunit RPN13 26S proteasome regulatory subunit RPN13 26S proteasome regulatory subunit RPN13 26S proteasome regulatory subunit RPN13 26S proteasome regulatory subunit RPN13 26S proteasome regulatory subunit RPN13 26S proteasome regulatory subunit RPN13 26S proteasome regulatory subunit RPN13-like 26S proteasome regulatory subunit RPN13 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03050 Proteasome 6
sbi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03050 Proteasome 6
osa03008 Ribosome biogenesis in eukaryotes 2
osa03083 Polycomb repressive complex 2
osa04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 5
tae03050 Proteasome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 7
tae03050 Proteasome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 4
tae03050 Proteasome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03420 Nucleotide excision repair 2
bdi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04120 Ubiquitin mediated proteolysis 3
ath04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 3
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 3
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 3
bra03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04144 Endocytosis 2
vvi03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
ppo03050 Proteasome 3
ppo03013 Nucleocytoplasmic transport 2
ppo04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 10
mtr03020 RNA polymerase 2
mtr03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03020 RNA polymerase 4
ghi03420 Nucleotide excision repair 4
ghi03050 Proteasome 2
ghi04120 Ubiquitin mediated proteolysis 2
ghi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03020 RNA polymerase 4
ghi03420 Nucleotide excision repair 4
ghi03050 Proteasome 2
ghi04120 Ubiquitin mediated proteolysis 2
ghi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 3
bna04141 Protein processing in endoplasmic reticulum 2
bna03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 6
bna04382 Cornified envelope formation 6
bna04141 Protein processing in endoplasmic reticulum 2
bna03050 Proteasome 2
bna00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03082 ATP-dependent chromatin remodeling 2
sot03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03050 Proteasome 2
nta00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
nta04141 Protein processing in endoplasmic reticulum 2
nta03082 ATP-dependent chromatin remodeling 2
nta03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03050 Proteasome 2
nta03082 ATP-dependent chromatin remodeling 2
nta03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04141 Protein processing in endoplasmic reticulum 9
cre03060 Protein export 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 8066568 4339809 123182034 123133334 123056065 123442913 100827907 817200 100815281 100799938 101258384 103858347 100250036 7485521 11435925 121220192 107926275 106438409 106388388 102591202 102623545 107800592 107806049 5725103
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