ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
sbi-r.1	8074004	histone H3.2
sbi-r.1	8073013	histone H3.2
sbi-r.1	110436307	histone H3.3
sbi-r.1	8064241	histone H3.2
zma-u.5	100502113	Histone H3
zma-u.5	100381287	histone H3.3
zma-u.5	103641629	histone H3.2
osa-u.5	4340203	histone H3.2
osa-u.5	9271591	histone H3.2
tae-r.2	123121324	histone H3.2
tae-r.2	123111760	histone H3.2
tae-r.2	123083067	histone H3.2
hvu-r.1	123426872	histone H3.3
hvu-r.1	123426702	histone H3.2
hvu-r.1	123424186	histone H3.2-like
bdi-r.1	100825800	histone H3.2
bdi-r.1	100826679	histone H3.2
ath-u.5	AT1G75600	Histone superfamily protein
gma-u.5	100809785	histone H3.3
gma-u.5	100810646	histone H3.2
gma-u.5	100817768	histone H3.2
sly-u.5	101268556	histone H3.2-like
sly-u.5	101263845	histone H3.2
sly-u.5	101263309	histone H3.3
bra-r.6	103836349	histone H3.2
bra-r.6	103854831	histone H3.3
vvi-u.5	100258920	histone H3.2
vvi-u.5	100260775	histone H3-like
vvi-u.5	100248958	histone H3.3
ppo-u.5	7455189	histone H3.3
ppo-u.5	7458004	histone H3.2
ppo-u.5	7493256	histone H3.2
mtr-u.5	11405531	histone H3.3
mtr-u.5	11405867	histone H3.3
mtr-u.5	11408671	histone H3.3
ghi-r.1	121204759	histone H3.2
ghi-r.1	121212654	histone H3.2
ghi-r.1	107913842	histone H3.2
bna-r.1	106413709	histone H3.2
bna-r.1	106390967	histone H3.3
bna-r.1	106390768	histone H3.2
sot-r.1	102581855	histone H3.2
sot-r.1	102601431	histone H3.2
sot-r.1	102601089	histone H3.2
cit-r.1	127899039	histone H3.2-like
cit-r.1	102611327	histone H3.3
cit-r.1	102615014	histone H3.3
nta-r.1	107816201	histone H3.2
nta-r.1	107816835	histone H3.2
cre-r.1	CHLRE_06g265500v5	uncharacterized protein
cre-r.1	CHLRE_16g649900v5	uncharacterized protein
cre-r.1	CHLRE_06g274850v5	uncharacterized protein

Top 50 coexpressed genes to 8074004 (sbi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 8074004 (sbi-r.1 coexpression data)

CoexMap"8074004"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0000786 [list] [network] nucleosome

(70 genes)

IEA

GO MF

GO:0030527 [list] [network] structural constituent of chromatin	(61 genes)	IEA
GO:0046982 [list] [network] protein heterodimerization activity	(96 genes)	IEA
GO:0003677 [list] [network] DNA binding	(1849 genes)	IEA

Protein

XP_002447846.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 8, chlo 1

(predict for XP_002447846.1)

Subcellular
localization
TargetP

chlo 7, mito 3

(predict for XP_002447846.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sbi-r.1 for 8074004	sbi-r.1 for 8073013	sbi-r.1 for 110436307	sbi-r.1 for 8064241	zma-u.5 for 100502113	zma-u.5 for 100381287	zma-u.5 for 103641629	osa-u.5 for 4340203	osa-u.5 for 9271591	tae-r.2 for 123121324	tae-r.2 for 123111760	tae-r.2 for 123083067	hvu-r.1 for 123426872	hvu-r.1 for 123426702	hvu-r.1 for 123424186	bdi-r.1 for 100825800	bdi-r.1 for 100826679	ath-u.5 for AT1G75600	gma-u.5 for 100809785	gma-u.5 for 100810646	gma-u.5 for 100817768	sly-u.5 for 101268556	sly-u.5 for 101263845	sly-u.5 for 101263309	bra-r.6 for 103836349	bra-r.6 for 103854831	vvi-u.5 for 100258920	vvi-u.5 for 100260775	vvi-u.5 for 100248958	ppo-u.5 for 7455189	ppo-u.5 for 7458004	ppo-u.5 for 7493256	mtr-u.5 for 11405531	mtr-u.5 for 11405867	mtr-u.5 for 11408671	ghi-r.1 for 121204759	ghi-r.1 for 121212654	ghi-r.1 for 107913842	bna-r.1 for 106413709	bna-r.1 for 106390967	bna-r.1 for 106390768	sot-r.1 for 102581855	sot-r.1 for 102601431	sot-r.1 for 102601089	cit-r.1 for 127899039	cit-r.1 for 102611327	cit-r.1 for 102615014	nta-r.1 for 107816201	nta-r.1 for 107816835	cre-r.1 for CHLRE_06g265500v5	cre-r.1 for CHLRE_16g649900v5	cre-r.1 for CHLRE_06g274850v5

Ortholog

Ortholog ID: 46

Species

sbi

zma

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

HTR11

Function^*

histone H3.2

histone H3.3

histone H3.2

histone H3.3

histone H3.2

histone H3.3

histone H3.2

histone H3.3-like

Histone superfamily protein

histone 3 11

histone H3.3

histone H3.2

uncharacterized LOC100305466

histone H3.2-like

histone H3.3

histone H3.2

histone H3.3

histone H3.2

histone H3.3

histone H3.2

histone H3.3

histone H3.2

histone H3.3

histone H3.2

histone H3.3

histone H3.2

histone H3.2-like

histone H3.3

histone H3.2

histone H3.3

histone H3.2

histone H3.3

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03082	ATP-dependent chromatin remodeling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03082	ATP-dependent chromatin remodeling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03082	ATP-dependent chromatin remodeling	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03082	ATP-dependent chromatin remodeling	3
bdi00230	Purine metabolism	2
bdi00240	Pyrimidine metabolism	2
bdi00480	Glutathione metabolism	2
bdi01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03082	ATP-dependent chromatin remodeling	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03082	ATP-dependent chromatin remodeling	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03082	ATP-dependent chromatin remodeling	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03082	ATP-dependent chromatin remodeling	4
sly00240	Pyrimidine metabolism	3
sly01232	Nucleotide metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03082	ATP-dependent chromatin remodeling	3
sly00240	Pyrimidine metabolism	2
sly01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	16

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03082	ATP-dependent chromatin remodeling	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03082	ATP-dependent chromatin remodeling	4
vvi03030	DNA replication	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00240	Pyrimidine metabolism	2
vvi01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03082	ATP-dependent chromatin remodeling	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03272	Virion - Hepatitis viruses	2
ppo04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03082	ATP-dependent chromatin remodeling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	4
mtr03015	mRNA surveillance pathway	2
mtr03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00240	Pyrimidine metabolism	3
ghi01232	Nucleotide metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03082	ATP-dependent chromatin remodeling	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03082	ATP-dependent chromatin remodeling	2
sot03440	Homologous recombination	2
sot03460	Fanconi anemia pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	14

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00240	Pyrimidine metabolism	3
sot01232	Nucleotide metabolism	3
sot03082	ATP-dependent chromatin remodeling	2
sot00230	Purine metabolism	2
sot00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00240	Pyrimidine metabolism	5
cit01232	Nucleotide metabolism	5
cit00230	Purine metabolism	3
cit00480	Glutathione metabolism	3
cit03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00240	Pyrimidine metabolism	2
cit01232	Nucleotide metabolism	2
cit03030	DNA replication	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03082	ATP-dependent chromatin remodeling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03082	ATP-dependent chromatin remodeling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03420	Nucleotide excision repair	2
nta04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03082	ATP-dependent chromatin remodeling	3

Expression

Expression pattern

Entrez Gene ID^*

8074004

8068386

110433573

103646471

103638044

103646477

9271591

4340006

123157517

123085076

123169031

123413522

123407880

100826679

100823859

836661

836660

100809785

102669107

100305466

101268556

101260571

101254197

103855894

103850291

103839289

100258920

100257369

100263009

7496045

7490669

7466789

11408671

11433985

25493536

107957781

107907341

107951105

106441254

106439456

106416431

102584625

102586673

102581522

102611327

102621851

102627888

107816201

107831322

107801897

5725959

5727766

5716481

The preparation time of this page was 0.3 [sec].


Species	sbi	zma	osa	tae	hvu	bdi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	4	3	2	3	3	2	1	3	3	2	3	3	3	3	3	3	3	2	3

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 8074004 (sbi-r.1 coexpression data)

Top 50 enrichment test to 8074004 (sbi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**