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Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   8075183   transcription termination factor MTERF8, chloroplastic 
 sbi-r.1   8076935   uncharacterized LOC8076935 
 sbi-r.1   8071326   uncharacterized LOC8071326 
 sbi-r.1   8066427   transcription termination factor MTERF2, chloroplastic 
 zma-u.5   100217134   uncharacterized LOC100217134 
 zma-u.5   100194019   uncharacterized LOC100194019 
 zma-u.5   100193811   uncharacterized LOC100193811 
 osa-u.5   9266609   transcription termination factor MTERF4, chloroplastic 
 osa-u.5   9267605   transcription termination factor MTERF8, chloroplastic 
 osa-u.5   4340540   transcription termination factor MTEF1, chloroplastic 
 tae-r.2   123135441   uncharacterized LOC123135441 
 tae-r.2   123135440   uncharacterized LOC123135440 
 tae-r.2   123135439   uncharacterized LOC123135439 
 hvu-r.1   123401957   uncharacterized LOC123401957 
 hvu-r.1   123402280   uncharacterized LOC123402280 
 bdi-r.1   112268504   transcription termination factor MTEF1, chloroplastic-like 
 bdi-r.1   100842672   uncharacterized LOC100842672 
 bdi-r.1   100820939   uncharacterized LOC100820939 
 ath-u.5   AT5G07900   Mitochondrial transcription termination factor family protein 
 ath-u.5   AT5G64950   Mitochondrial transcription termination factor family protein 
 ath-u.5   AT1G21150   Mitochondrial transcription termination factor family protein 
 gma-u.5   100806920   transcription termination factor MTERF15, mitochondrial 
 gma-u.5   100813396   transcription termination factor MTERF15, mitochondrial 
 gma-u.5   106799612   uncharacterized LOC106799612 
 sly-u.5   101253358   transcription termination factor MTERF5, chloroplastic 
 sly-u.5   101268097   transcription termination factor MTERF6, chloroplastic/mitochondrial 
 sly-u.5   101267803   uncharacterized LOC101267803 
 bra-r.6   103862768   uncharacterized LOC103862768 
 bra-r.6   103858260   transcription termination factor MTERF8, chloroplastic 
 vvi-u.5   100257952   transcription termination factor MTERF5, chloroplastic 
 vvi-u.5   100256384   transcription termination factor MTERF5, chloroplastic 
 vvi-u.5   100254077   uncharacterized LOC100254077 
 ppo-u.5   7462501   transcription termination factor MTERF4, chloroplastic 
 ppo-u.5   7462500   uncharacterized LOC7462500 
 ppo-u.5   7461323   transcription termination factor MTERF8, chloroplastic 
 mtr-u.5   25501781   transcription termination factor MTERF5, chloroplastic 
 mtr-u.5   25501780   uncharacterized LOC25501780 
 mtr-u.5   25494089   uncharacterized LOC25494089 
 ghi-r.1   107920427   transcription termination factor MTERF5, chloroplastic 
 ghi-r.1   121204522   transcription termination factor MTERF8, chloroplastic 
 ghi-r.1   107947393   uncharacterized LOC107947393 
 bna-r.1   106438366   transcription termination factor MTERF8, chloroplastic 
 bna-r.1   BNAC03G44350D   transcription termination factor MTERF8, chloroplastic 
 bna-r.1   106365769   transcription termination factor MTERF4, chloroplastic-like 
 sot-r.1   102602405   uncharacterized LOC102602405 
 sot-r.1   102602747   uncharacterized LOC102602747 
 sot-r.1   102587512   uncharacterized LOC102587512 
 cit-r.1   102615995   transcription termination factor MTERF5, chloroplastic-like 
 cit-r.1   127900674   transcription termination factor MTERF15, mitochondrial-like 
 nta-r.1   107791224   uncharacterized LOC107791224 

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Top 50 coexpressed genes to 8075183 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 8075183 (sbi-r.1 coexpression data)

CoexMap"8075183"


sbiLOC8075183 | Entrez gene ID : 8075183      
Species sbi zma osa tae hvu bdi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 4 3 3 3 2 3 3 3 3 2 3 3 3 3 3 3 2 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009658 [list] [network] chloroplast organization  (71 genes)  IEA  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1596 genes)  IEA  
GO CC
GO:0009507 [list] [network] chloroplast  (560 genes)  IEA  
GO MF
GO:0003690 [list] [network] double-stranded DNA binding  (461 genes)  IEA  
Protein XP_002454582.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 7,  mito 2,  cyto_mito 1  (predict for XP_002454582.1)
Subcellular
localization
TargetP
mito 8  (predict for XP_002454582.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
8075183
sbi-r.1
for
8076935
sbi-r.1
for
8071326
sbi-r.1
for
8066427
zma-u.5
for
100217134
zma-u.5
for
100194019
zma-u.5
for
100193811
osa-u.5
for
9266609
osa-u.5
for
9267605
osa-u.5
for
4340540
tae-r.2
for
123135441
tae-r.2
for
123135440
tae-r.2
for
123135439
hvu-r.1
for
123401957
hvu-r.1
for
123402280
bdi-r.1
for
112268504
bdi-r.1
for
100842672
bdi-r.1
for
100820939
ath-u.5
for
AT5G07900
ath-u.5
for
AT5G64950
ath-u.5
for
AT1G21150
gma-u.5
for
100806920
gma-u.5
for
100813396
gma-u.5
for
106799612
sly-u.5
for
101253358
sly-u.5
for
101268097
sly-u.5
for
101267803
bra-r.6
for
103862768
bra-r.6
for
103858260
vvi-u.5
for
100257952
vvi-u.5
for
100256384
vvi-u.5
for
100254077
ppo-u.5
for
7462501
ppo-u.5
for
7462500
ppo-u.5
for
7461323
mtr-u.5
for
25501781
mtr-u.5
for
25501780
mtr-u.5
for
25494089
ghi-r.1
for
107920427
ghi-r.1
for
121204522
ghi-r.1
for
107947393
bna-r.1
for
106438366
bna-r.1
for
BNAC03G44350D
bna-r.1
for
106365769
sot-r.1
for
102602405
sot-r.1
for
102602747
sot-r.1
for
102587512
cit-r.1
for
102615995
cit-r.1
for
127900674
nta-r.1
for
107791224


Ortholog ID: 37
Species sbi sbi sbi zma zma zma osa osa tae tae tae hvu hvu bdi bdi ath ath ath gma gma gma sly sly sly bra bra vvi vvi vvi ppo ppo mtr mtr mtr ghi ghi ghi bna bna bna sot sot sot cit cit cit nta nta nta
Symbol LOC8062993 LOC8057353 LOC8057363 LOC100193811 LOC100284682 LOC100285204 LOC4338741 LOC4343048 LOC123080704 LOC123145473 LOC123145472 LOC123401732 LOC123411721 LOC100840205 LOC100837156 AT5G07900 AT5G64950 AT1G21150 LOC100806920 LOC102661687 LOC106796317 LOC101268097 LOC101267803 LOC101258025 LOC103862768 LOC103858260 LOC100258309 LOC100246295 LOC100241175 LOC18111233 LOC18094344 LOC25501780 LOC25494089 LOC11422280 LOC121204522 LOC107916058 LOC107931417 BNAC03G44350D LOC106365769 LOC106418515 LOC102585626 LOC102588163 LOC102589966 LOC127900674 LOC102622219 LOC102619962 LOC107777294 LOC107759636 LOC107826212
Function* uncharacterized LOC8062993 transcription termination factor MTEF1, chloroplastic uncharacterized LOC8057363 uncharacterized LOC100193811 uncharacterized LOC100284682 uncharacterized LOC100285204 transcription termination factor MTERF4, chloroplastic transcription termination factor MTERF2, chloroplastic uncharacterized LOC123080704 transcription termination factor MTERF8, chloroplastic uncharacterized LOC123145472 transcription termination factor MTERF8, chloroplastic-like uncharacterized LOC123411721 uncharacterized LOC100840205 uncharacterized LOC100837156 Mitochondrial transcription termination factor family protein Mitochondrial transcription termination factor family protein Mitochondrial transcription termination factor family protein transcription termination factor MTERF15, mitochondrial uncharacterized LOC102661687 uncharacterized LOC106796317 transcription termination factor MTERF6, chloroplastic/mitochondrial uncharacterized LOC101267803 transcription termination factor MTERF9, chloroplastic uncharacterized LOC103862768 transcription termination factor MTERF8, chloroplastic transcription termination factor MTERF15, mitochondrial uncharacterized LOC100246295 transcription termination factor MTERF9, chloroplastic-like uncharacterized LOC18111233 transcription termination factor MTERF9, chloroplastic uncharacterized LOC25501780 uncharacterized LOC25494089 uncharacterized LOC11422280 transcription termination factor MTERF8, chloroplastic transcription termination factor MTERF6, chloroplastic/mitochondrial uncharacterized LOC107931417 transcription termination factor MTERF8, chloroplastic transcription termination factor MTERF4, chloroplastic-like transcription termination factor MTERF2, chloroplastic-like uncharacterized LOC102585626 uncharacterized LOC102588163 uncharacterized LOC102589966 transcription termination factor MTERF15, mitochondrial-like uncharacterized LOC102622219 transcription termination factor MTERF2, chloroplastic-like transcription termination factor MTERF15, mitochondrial-like transcription termination factor MTERF8, chloroplastic-like transcription termination factor MTERF8, chloroplastic-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 3
sbi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03022 Basal transcription factors 2
sbi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 4
zma00195 Photosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00510 N-Glycan biosynthesis 2
hvu04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 7
bdi03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00061 Fatty acid biosynthesis 3
gma01212 Fatty acid metabolism 3
gma00620 Pyruvate metabolism 2
gma00640 Propanoate metabolism 2
gma01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03015 mRNA surveillance pathway 2
sly04382 Cornified envelope formation 2
sly01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 3
bra03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04141 Protein processing in endoplasmic reticulum 3
ppo00190 Oxidative phosphorylation 2
ppo01200 Carbon metabolism 2
ppo01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 7
ghi00860 Porphyrin metabolism 2
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 10
ghi00860 Porphyrin metabolism 2
ghi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03082 ATP-dependent chromatin remodeling 4
ghi03250 Viral life cycle - HIV-1 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00230 Purine metabolism 2
bna00670 One carbon pool by folate 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03050 Proteasome 5
sot00280 Valine, leucine and isoleucine degradation 2
sot00270 Cysteine and methionine metabolism 2
sot00470 D-Amino acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 4
nta00220 Arginine biosynthesis 2
nta01210 2-Oxocarboxylic acid metabolism 2
nta01230 Biosynthesis of amino acids 2
nta00230 Purine metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 8062993 8057353 8057363 100193811 100284682 100285204 4338741 4343048 123080704 123145473 123145472 123401732 123411721 100840205 100837156 830684 836619 838711 100806920 102661687 106796317 101268097 101267803 101258025 103862768 103858260 100258309 100246295 100241175 18111233 18094344 25501780 25494089 11422280 121204522 107916058 107931417 106434119 106365769 106418515 102585626 102588163 102589966 127900674 102622219 102619962 107777294 107759636 107826212
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