ATTED-II : GeneCoexpression result

Species	Gene	Description
sbi-r.1	8075570	uncharacterized LOC8075570
sbi-r.1	8067527	homeobox protein HOX1A
zma-u.5	732843	HOX1B protein
zma-u.5	103631611	uncharacterized LOC103631611
zma-u.5	542536	uncharacterized LOC542536
osa-u.5	4340565	homeobox protein HAZ1-like
tae-r.2	123070616	homeobox protein HAZ1
tae-r.2	123079020	homeobox protein HAZ1
hvu-r.1	123444399	homeobox protein HAZ1-like
hvu-r.1	123447070	homeobox protein HOX1A-like
bdi-r.1	100833579	homeobox protein HAZ1
bdi-r.1	100827663	homeobox protein HOX1A
ath-u.5	HAT3.1	Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain-containing protein
gma-u.5	100306715	homeobox protein HAT3.1
gma-u.5	100811458	homeobox protein HAT3.1
sly-u.5	101247266	PHD-finger family homeodomain protein
bra-r.6	103869447	homeobox protein HAT3.1
bra-r.6	103837222	homeobox protein HAT3.1
vvi-u.5	100254410	homeobox protein HAT3.1
ppo-u.5	7465051	homeobox protein HAT3.1
ppo-u.5	7469609	homeobox protein HAT3.1
mtr-u.5	25485369	homeobox protein HAT3.1
ghi-r.1	107945144	homeobox protein HAT3.1
ghi-r.1	107935031	homeobox protein HAT3.1
bna-r.1	125609565	homeobox protein HAT3.1-like
bna-r.1	106435647	homeobox protein HAT3.1
bna-r.1	106428382	homeobox protein HAT3.1
sot-r.1	102596310	pathogenesis-related homeodomain protein
cit-r.1	102620589	homeobox protein HAT3.1
nta-r.1	107782980	pathogenesis-related homeodomain protein
nta-r.1	107800140	pathogenesis-related homeodomain protein
nta-r.1	107807352	pathogenesis-related homeodomain protein
cre-r.1	CHLRE_12g492200v5	uncharacterized protein

Annotation

functional annotation

KEGG

GO BP

GO:0006325 [list] [network] chromatin organization	(130 genes)	IEA
GO:0006355 [list] [network] regulation of DNA-templated transcription	(1596 genes)	IEA

GO CC

GO:0005634 [list] [network] nucleus

(2977 genes)

IEA

GO MF

GO:0003682 [list] [network] chromatin binding	(124 genes)	IEA
GO:0000981 [list] [network] DNA-binding transcription factor activity, RNA polymerase II-specific	(251 genes)	IEA
GO:0003677 [list] [network] DNA binding	(1849 genes)	IEA

Protein

XP_002458483.2 [sequence] [blastp]
XP_021310812.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9, cyto 1, cysk 1	(predict for XP_002458483.2)
nucl 9, cyto 1, cysk 1	(predict for XP_021310812.1)

Subcellular
localization
TargetP

chlo 6, mito 4	(predict for XP_002458483.2)
chlo 6, mito 4	(predict for XP_021310812.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sbi-r.1 for 8075570	sbi-r.1 for 8067527	zma-u.5 for 732843	zma-u.5 for 103631611	zma-u.5 for 542536	osa-u.5 for 4340565	tae-r.2 for 123070616	tae-r.2 for 123079020	hvu-r.1 for 123444399	hvu-r.1 for 123447070	bdi-r.1 for 100833579	bdi-r.1 for 100827663	ath-u.5 for HAT3.1	gma-u.5 for 100306715	gma-u.5 for 100811458	sly-u.5 for 101247266	bra-r.6 for 103869447	bra-r.6 for 103837222	vvi-u.5 for 100254410	ppo-u.5 for 7465051	ppo-u.5 for 7469609	mtr-u.5 for 25485369	ghi-r.1 for 107945144	ghi-r.1 for 107935031	bna-r.1 for 125609565	bna-r.1 for 106435647	bna-r.1 for 106428382	sot-r.1 for 102596310	cit-r.1 for 102620589	nta-r.1 for 107782980	nta-r.1 for 107800140	nta-r.1 for 107807352	cre-r.1 for CHLRE_12g492200v5

Ortholog

Ortholog ID: 3581

Species

sbi

zma

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

HAT3.1

Function^*

uncharacterized LOC8075570

homeobox protein HOX1A

HOX1B protein

uncharacterized LOC542536

Zmhox1a homeobox protein

homeobox protein HAZ1-like

homeobox protein HOX1A

homeobox protein HAZ1-like

homeobox protein HOX1A-like

homeobox protein HAZ1

homeobox protein HOX1A

Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain-containing protein

homeobox protein HAT3.1

PHD-finger family homeodomain protein

homeobox protein HAT3.1

homeobox protein HAT3.1-like

homeobox protein HAT3.1

pathogenesis-related homeodomain protein

homeobox protein HAT3.1

pathogenesis-related homeodomain protein

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	2
sbi03082	ATP-dependent chromatin remodeling	2
sbi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03018	RNA degradation	4
sbi03040	Spliceosome	2
sbi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03020	RNA polymerase	3
bdi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03013	Nucleocytoplasmic transport	3
bdi03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00220	Arginine biosynthesis	2
sly00250	Alanine, aspartate and glutamate metabolism	2
sly00710	Carbon fixation by Calvin cycle	2
sly01200	Carbon metabolism	2
sly01210	2-Oxocarboxylic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04814	Motor proteins	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03008	Ribosome biogenesis in eukaryotes	6
mtr03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03008	Ribosome biogenesis in eukaryotes	2
sot03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	2
nta03013	Nucleocytoplasmic transport	2
nta03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	2
nta03013	Nucleocytoplasmic transport	2
nta03250	Viral life cycle - HIV-1	2
nta03015	mRNA surveillance pathway	2
nta03030	DNA replication	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03013	Nucleocytoplasmic transport	4
nta03008	Ribosome biogenesis in eukaryotes	2
nta03250	Viral life cycle - HIV-1	2
nta03015	mRNA surveillance pathway	2
nta03030	DNA replication	2

Expression

Expression pattern

Entrez Gene ID^*

8075570

8067527

732843

542536

542406

4340565

123063331

123182651

123444399

123447070

100833579

100827663

821485

100306715

100811458

101247266

103869447

103837222

100254410

7465051

7469609

25485369

107935031

107908867

125609565

106435647

106346600

102596310

102620589

107782980

107800140

107807352

5726138

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 8075570 (sbi-r.1 coexpression data)

Top 50 enrichment test to 8075570 (sbi-r.1 coexpression data)


Species	sbi	zma	osa	tae	hvu	bdi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	2	3	1	2	2	2	1	2	1	2	1	2	1	2	3	1	1	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 8075570 (sbi-r.1 coexpression data)

Top 50 enrichment test to 8075570 (sbi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**