ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
sbi-r.1	8077650	kynurenine formamidase
zma-u.5	100274378	uncharacterized LOC100274378
osa-u.5	4346391	cyclase-like protein 4
osa-u.5	4345252	cyclase-like protein 3
osa-u.5	4341616	cyclase-like protein 2
tae-r.2	123120648	cyclase-like protein 4
tae-r.2	123104076	cyclase-like protein 3
tae-r.2	123106898	cyclase-like protein 4
hvu-r.1	123395428	cyclase-like protein 4
hvu-r.1	123399134	cyclase-like protein 3
bdi-r.1	100831073	kynurenine formamidase
ath-u.5	AT4G34180	Cyclase family protein
ath-u.5	AT4G35220	Cyclase family protein
gma-u.5	100800277	cyclase-like protein 2
gma-u.5	100782032	cyclase-like protein 2
gma-u.5	100816766	putative cyclase
sly-u.5	101253534	cyclase-like protein 2
bra-r.6	103862325	cyclase-like protein 1
bra-r.6	103830834	cyclase-like protein 2
bra-r.6	103838707	cyclase-like protein 3
vvi-u.5	100853810	cyclase-like protein 2
ppo-u.5	7457549	cyclase-like protein 2
ppo-u.5	7465034	cyclase-like protein 2
mtr-u.5	25485427	cyclase-like protein 2
mtr-u.5	25485429	cyclase-like protein 2
ghi-r.1	121212221	cyclase-like protein 2
ghi-r.1	107934145	cyclase-like protein 2
ghi-r.1	107928802	cyclase-like protein 2
bna-r.1	106375265	cyclase-like protein 2
bna-r.1	106433760	cyclase-like protein 3
sot-r.1	102591479	kynurenine formamidase-like
sot-r.1	102579417	kynurenine formamidase
cit-r.1	102612208	cyclase-like protein 1
cit-r.1	102611912	cyclase-like protein 2
nta-r.1	107807372	cyclase-like protein 2
nta-r.1	107799895	cyclase-like protein 2

Top 50 coexpressed genes to 8077650 (sbi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 8077650 (sbi-r.1 coexpression data)

CoexMap"8077650"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0019441 [list] [network] L-tryptophan catabolic process to kynurenine

(3 genes)

IEA

GO CC

GO MF

GO:0004061 [list] [network] arylformamidase activity

(2 genes)

IEA

Protein

XP_002451688.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 6, mito 3

(predict for XP_002451688.1)

Subcellular
localization
TargetP

mito 2

(predict for XP_002451688.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sbi-r.1 for 8077650	zma-u.5 for 100274378	osa-u.5 for 4346391	osa-u.5 for 4345252	osa-u.5 for 4341616	tae-r.2 for 123120648	tae-r.2 for 123104076	tae-r.2 for 123106898	hvu-r.1 for 123395428	hvu-r.1 for 123399134	bdi-r.1 for 100831073	ath-u.5 for AT4G34180	ath-u.5 for AT4G35220	gma-u.5 for 100800277	gma-u.5 for 100782032	gma-u.5 for 100816766	sly-u.5 for 101253534	bra-r.6 for 103862325	bra-r.6 for 103830834	bra-r.6 for 103838707	vvi-u.5 for 100853810	ppo-u.5 for 7457549	ppo-u.5 for 7465034	mtr-u.5 for 25485427	mtr-u.5 for 25485429	ghi-r.1 for 121212221	ghi-r.1 for 107934145	ghi-r.1 for 107928802	bna-r.1 for 106375265	bna-r.1 for 106433760	sot-r.1 for 102591479	sot-r.1 for 102579417	cit-r.1 for 102612208	cit-r.1 for 102611912	nta-r.1 for 107807372	nta-r.1 for 107799895

Ortholog

Ortholog ID: 3370

Species

sbi

zma

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

Symbol

Function^*

kynurenine formamidase

uncharacterized LOC100274378

cyclase-like protein 4

cyclase-like protein 3

cyclase-like protein 2

cyclase-like protein 4

cyclase-like protein 3

cyclase-like protein 4

cyclase-like protein 3

kynurenine formamidase

Cyclase family protein

cyclase-like protein 2

putative cyclase

cyclase-like protein 2

cyclase-like protein 1

cyclase-like protein 2

cyclase-like protein 3

cyclase-like protein 2

cyclase-like protein 3

cyclase-like protein 2

cyclase-like protein 1

cyclase-like protein 2

kynurenine formamidase-like

kynurenine formamidase

cyclase-like protein 1

cyclase-like protein 2

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04142	Lysosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00480	Glutathione metabolism	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00920	Sulfur metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03050	Proteasome	2
osa00190	Oxidative phosphorylation	2
osa04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00561	Glycerolipid metabolism	2
osa00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00650	Butanoate metabolism	2
tae01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae01200	Carbon metabolism	5
tae00650	Butanoate metabolism	4
tae00071	Fatty acid degradation	3
tae01212	Fatty acid metabolism	3
tae00360	Phenylalanine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04142	Lysosome	3
ath00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath01200	Carbon metabolism	5
ath00480	Glutathione metabolism	5
ath00020	Citrate cycle (TCA cycle)	3
ath04146	Peroxisome	3
ath00630	Glyoxylate and dicarboxylate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00230	Purine metabolism	2
gma00511	Other glycan degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00500	Starch and sucrose metabolism	2
gma00190	Oxidative phosphorylation	2
gma04142	Lysosome	2
gma04145	Phagosome	2
gma00270	Cysteine and methionine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00270	Cysteine and methionine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi01200	Carbon metabolism	6
vvi01230	Biosynthesis of amino acids	6
vvi00010	Glycolysis / Gluconeogenesis	4
vvi00710	Carbon fixation by Calvin cycle	4
vvi00650	Butanoate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04016	MAPK signaling pathway - plant	3
ppo04075	Plant hormone signal transduction	3
ppo00052	Galactose metabolism	2
ppo00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00053	Ascorbate and aldarate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi01240	Biosynthesis of cofactors	4
ghi00190	Oxidative phosphorylation	3
ghi04146	Peroxisome	2
ghi00740	Riboflavin metabolism	2
ghi00785	Lipoic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi01240	Biosynthesis of cofactors	3
ghi00190	Oxidative phosphorylation	3
ghi04146	Peroxisome	2
ghi00740	Riboflavin metabolism	2
ghi00130	Ubiquinone and other terpenoid-quinone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00030	Pentose phosphate pathway	4
ghi00710	Carbon fixation by Calvin cycle	4
ghi01200	Carbon metabolism	4
ghi01230	Biosynthesis of amino acids	4
ghi00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00511	Other glycan degradation	2
bna04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00511	Other glycan degradation	2
bna04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00280	Valine, leucine and isoleucine degradation	2
sot00410	beta-Alanine metabolism	2
sot00640	Propanoate metabolism	2
sot01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00010	Glycolysis / Gluconeogenesis	3
cit00053	Ascorbate and aldarate metabolism	3
cit00071	Fatty acid degradation	3
cit00310	Lysine degradation	3
cit00330	Arginine and proline metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	7
cit04120	Ubiquitin mediated proteolysis	2

Expression

Expression pattern

Entrez Gene ID^*

8077650

100274378

4346391

4345252

4341616

123120648

123104076

123111477

123395428

123399134

100831073

829566

829675

100800277

100816766

100801168

101253534

103862325

103830834

103838707

100853810

7457549

7465034

25485427

25485429

121212221

107894297

107928920

106375265

106441136

106453151

102591479

102579417

102612208

102611912

107807372

107799895

The preparation time of this page was 0.1 [sec].


Species	sbi	zma	osa	tae	hvu	bdi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	1	1	3	3	2	1	2	3	1	3	1	2	2	3	2	2	2	2	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 8077650 (sbi-r.1 coexpression data)

Top 50 enrichment test to 8077650 (sbi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**