ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
sbi-r.1	8077837	DCN1-like protein 4
zma-u.5	100282616	DCN1-like protein 4
zma-u.5	100283419	DCN1-like protein 4
osa-u.5	9269029	uncharacterized LOC9269029
tae-r.2	123154239	DCN1-like protein 4
tae-r.2	123159424	DCN1-like protein 4
tae-r.2	123165157	DCN1-like protein 4
hvu-r.1	123409549	DCN1-like protein 4
bdi-r.1	100835555	DCN1-like protein 3
ath-u.5	AT1G15860	defective in cullin neddylation protein (DUF298)
gma-u.5	100776788	DCN1-like protein 4-like
gma-u.5	100499856	cullin binding domain-containg protein
sly-u.5	101267217	uncharacterized LOC101267217
sly-u.5	101257185	uncharacterized LOC101257185
bra-r.6	103836014	DCN1-like protein 4
bra-r.6	103842876	DCN1-like protein 4
vvi-u.5	100254164	uncharacterized LOC100254164
ppo-u.5	7478295	uncharacterized LOC7478295
ppo-u.5	7496054	uncharacterized LOC7496054
mtr-u.5	25491273	DCN1-like protein 4
ghi-r.1	107958447	DCN1-like protein 4
ghi-r.1	107901577	DCN1-like protein 4
ghi-r.1	107891628	DCN1-like protein 4
bna-r.1	106387574	DCN1-like protein 4
bna-r.1	106390354	DCN1-like protein 4
bna-r.1	106346804	DCN1-like protein 4
sot-r.1	102600446	DCN1-like protein 4
sot-r.1	102601773	DCN1-like protein 4
cit-r.1	102606901	uncharacterized LOC102606901
cit-r.1	102623721	uncharacterized LOC102623721
nta-r.1	107801421	uncharacterized LOC107801421
nta-r.1	107825027	uncharacterized LOC107825027
nta-r.1	107763791	uncharacterized LOC107763791

Top 50 coexpressed genes to 8077837 (sbi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 8077837 (sbi-r.1 coexpression data)

CoexMap"8077837"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0045116 [list] [network] protein neddylation	(6 genes)	IEA
GO:0051443 [list] [network] positive regulation of ubiquitin-protein transferase activity	(8 genes)	IEA

GO CC

GO:0000151 [list] [network] ubiquitin ligase complex

(143 genes)

IEA

GO MF

GO:0097602 [list] [network] cullin family protein binding	(18 genes)	IEA
GO:0031624 [list] [network] ubiquitin conjugating enzyme binding	(30 genes)	IEA
GO:0032182 [list] [network] ubiquitin-like protein binding	(65 genes)	IEA

Protein

XP_002444410.1 [sequence] [blastp]
XP_021321148.1 [sequence] [blastp]
XP_021321149.1 [sequence] [blastp]
XP_021321150.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 6, extr 1, cyto 1, mito 1, E.R. 1, cyto_E.R. 1	(predict for XP_002444410.1)
chlo 7, extr 1, cyto 1, mito 1	(predict for XP_021321148.1)
chlo 7, extr 1, cyto 1, mito 1	(predict for XP_021321149.1)
chlo 6, extr 1, cyto 1, mito 1, E.R. 1, cyto_E.R. 1	(predict for XP_021321150.1)

Subcellular
localization
TargetP

mito 6	(predict for XP_002444410.1)
chlo 7, mito 3	(predict for XP_021321148.1)
chlo 7, mito 3	(predict for XP_021321149.1)
mito 6	(predict for XP_021321150.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sbi-r.1 for 8077837	zma-u.5 for 100282616	zma-u.5 for 100283419	osa-u.5 for 9269029	tae-r.2 for 123154239	tae-r.2 for 123159424	tae-r.2 for 123165157	hvu-r.1 for 123409549	bdi-r.1 for 100835555	ath-u.5 for AT1G15860	gma-u.5 for 100776788	gma-u.5 for 100499856	sly-u.5 for 101267217	sly-u.5 for 101257185	bra-r.6 for 103836014	bra-r.6 for 103842876	vvi-u.5 for 100254164	ppo-u.5 for 7478295	ppo-u.5 for 7496054	mtr-u.5 for 25491273	ghi-r.1 for 107958447	ghi-r.1 for 107901577	ghi-r.1 for 107891628	bna-r.1 for 106387574	bna-r.1 for 106390354	bna-r.1 for 106346804	sot-r.1 for 102600446	sot-r.1 for 102601773	cit-r.1 for 102606901	cit-r.1 for 102623721	nta-r.1 for 107801421	nta-r.1 for 107825027	nta-r.1 for 107763791

Ortholog

Ortholog ID: 4148

Species

sbi

zma

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

Symbol

Function^*

DCN1-like protein 4

uncharacterized LOC9269029

DCN1-like protein 4

DCN1-like protein 3

defective in cullin neddylation protein (DUF298)

DCN1-like protein 4-like

cullin binding domain-containg protein

uncharacterized LOC101267217

uncharacterized LOC101257185

DCN1-like protein 4

uncharacterized LOC100254164

uncharacterized LOC7478295

uncharacterized LOC7496054

DCN1-like protein 4

uncharacterized LOC102606901

uncharacterized LOC102623721

uncharacterized LOC107801421

uncharacterized LOC107825027

uncharacterized LOC107763791

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04144	Endocytosis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03050	Proteasome	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03050	Proteasome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03050	Proteasome	11

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03050	Proteasome	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04142	Lysosome	2
bdi00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04120	Ubiquitin mediated proteolysis	3
ath04141	Protein processing in endoplasmic reticulum	3
ath04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04141	Protein processing in endoplasmic reticulum	3
gma00592	alpha-Linolenic acid metabolism	3
gma00100	Steroid biosynthesis	2
gma00561	Glycerolipid metabolism	2
gma00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04142	Lysosome	2
gma03013	Nucleocytoplasmic transport	2
gma04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04144	Endocytosis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04120	Ubiquitin mediated proteolysis	2
ppo00030	Pentose phosphate pathway	2
ppo00480	Glutathione metabolism	2
ppo01200	Carbon metabolism	2
ppo04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00600	Sphingolipid metabolism	3
ppo04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04120	Ubiquitin mediated proteolysis	2
mtr01040	Biosynthesis of unsaturated fatty acids	2
mtr00071	Fatty acid degradation	2
mtr01212	Fatty acid metabolism	2
mtr04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00190	Oxidative phosphorylation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00750	Vitamin B6 metabolism	2
ghi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03015	mRNA surveillance pathway	2
bna03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03015	mRNA surveillance pathway	4
bna03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03015	mRNA surveillance pathway	3
bna03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	11
sot04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	5
nta04120	Ubiquitin mediated proteolysis	4
nta00190	Oxidative phosphorylation	3
nta00270	Cysteine and methionine metabolism	2
nta03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00561	Glycerolipid metabolism	2
nta04144	Endocytosis	2
nta04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04144	Endocytosis	2

Expression

Expression pattern

Entrez Gene ID^*

8077837

100282616

100283419

9269029

123154239

123159424

123165157

123409549

100835555

838156

100776788

100499856

101267217

101257185

103836014

103842876

100254164

7478295

7496054

25491273

107901577

107889051

107906438

106390354

106346804

106406235

102600446

102601773

102606901

102623721

107801421

107825027

107763791

The preparation time of this page was 0.1 [sec].


Species	sbi	zma	osa	tae	hvu	bdi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	1	2	1	3	1	1	1	2	2	2	1	2	1	3	3	2	2	3	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 8077837 (sbi-r.1 coexpression data)

Top 50 enrichment test to 8077837 (sbi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**