ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
sbi-r.1	8078653	serine/threonine-protein phosphatase 6 regulatory subunit 3
sbi-r.1	110436281	serine/threonine-protein phosphatase 6 regulatory subunit 3-like
sbi-r.1	110430345	serine/threonine-protein phosphatase 6 regulatory subunit 3-like
zma-u.5	100217253	uncharacterized LOC100217253
zma-u.5	103652598	serine/threonine-protein phosphatase 6 regulatory subunit 2-like
zma-u.5	100384768	SIT4 phosphatase-associated family protein
osa-u.5	4339795	uncharacterized LOC4339795
osa-u.5	4337029	uncharacterized LOC4337029
osa-u.5	4327657	uncharacterized LOC4327657
tae-r.2	123078472	serine/threonine-protein phosphatase 6 regulatory subunit 3
tae-r.2	123190461	serine/threonine-protein phosphatase 6 regulatory subunit 3
tae-r.2	123070013	serine/threonine-protein phosphatase 6 regulatory subunit 3
hvu-r.1	123443782	serine/threonine-protein phosphatase 6 regulatory subunit 3-like
hvu-r.1	123427798	serine/threonine-protein phosphatase 6 regulatory subunit 3-like
bdi-r.1	100822811	serine/threonine-protein phosphatase 6 regulatory subunit 3
bdi-r.1	100827579	serine/threonine-protein phosphatase 6 regulatory subunit 3
ath-u.5	AT2G28360	SIT4 phosphatase-associated family protein
ath-u.5	AT3G45190	SIT4 phosphatase-associated family protein
ath-u.5	AT1G07990	SIT4 phosphatase-associated family protein
gma-u.5	100805409	serine/threonine-protein phosphatase 6 regulatory subunit 3
gma-u.5	100802276	serine/threonine-protein phosphatase 6 regulatory subunit 3-B
gma-u.5	100790416	serine/threonine-protein phosphatase 6 regulatory subunit 3
sly-u.5	101260507	uncharacterized LOC101260507
sly-u.5	101246331	uncharacterized LOC101246331
sly-u.5	101262982	uncharacterized LOC101262982
bra-r.6	103835210	serine/threonine-protein phosphatase 6 regulatory subunit 3
bra-r.6	103836409	serine/threonine-protein phosphatase 6 regulatory subunit 3
bra-r.6	103840394	serine/threonine-protein phosphatase 6 regulatory subunit 3
vvi-u.5	100260305	uncharacterized LOC100260305
vvi-u.5	100243011	uncharacterized LOC100243011
ppo-u.5	18098201	uncharacterized LOC18098201
ppo-u.5	7489334	uncharacterized LOC7489334
mtr-u.5	11416078	serine/threonine-protein phosphatase 6 regulatory subunit 3
mtr-u.5	11408739	serine/threonine-protein phosphatase 6 regulatory subunit 3
ghi-r.1	107940111	serine/threonine-protein phosphatase 6 regulatory subunit 3
ghi-r.1	107936068	serine/threonine-protein phosphatase 6 regulatory subunit 3
ghi-r.1	107930377	serine/threonine-protein phosphatase 6 regulatory subunit 3
bna-r.1	111199209	serine/threonine-protein phosphatase 6 regulatory subunit 3
bna-r.1	125601469	uncharacterized LOC125601469
bna-r.1	106446878	serine/threonine-protein phosphatase 6 regulatory subunit 3
sot-r.1	102587535	serine/threonine-protein phosphatase 6 regulatory subunit 3-like
sot-r.1	102596683	serine/threonine-protein phosphatase 6 regulatory subunit 3-like
sot-r.1	102599579	serine/threonine-protein phosphatase 6 regulatory subunit 3-like
cit-r.1	102623773	uncharacterized LOC102623773
cit-r.1	102629725	uncharacterized LOC102629725
nta-r.1	107768579	uncharacterized LOC107768579
nta-r.1	107830416	uncharacterized LOC107830416
nta-r.1	107780696	uncharacterized LOC107780696
cre-r.1	CHLRE_12g484150v5	uncharacterized protein

Top 50 coexpressed genes to 8078653 (sbi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 8078653 (sbi-r.1 coexpression data)

CoexMap"8078653"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

GO:0019903 [list] [network] protein phosphatase binding	(34 genes)	IEA
GO:0019888 [list] [network] protein phosphatase regulator activity	(78 genes)	IEA

Protein

XP_002455854.1 [sequence] [blastp]
XP_021312056.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 4, E.R. 3, chlo 1, E.R._plas 1	(predict for XP_002455854.1)
cyto 4, E.R. 3, chlo 1, E.R._plas 1	(predict for XP_021312056.1)

Subcellular
localization
TargetP

other 6	(predict for XP_002455854.1)
other 6	(predict for XP_021312056.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sbi-r.1 for 8078653	sbi-r.1 for 110436281	sbi-r.1 for 110430345	zma-u.5 for 100217253	zma-u.5 for 103652598	zma-u.5 for 100384768	osa-u.5 for 4339795	osa-u.5 for 4337029	osa-u.5 for 4327657	tae-r.2 for 123078472	tae-r.2 for 123190461	tae-r.2 for 123070013	hvu-r.1 for 123443782	hvu-r.1 for 123427798	bdi-r.1 for 100822811	bdi-r.1 for 100827579	ath-u.5 for AT2G28360	ath-u.5 for AT3G45190	ath-u.5 for AT1G07990	gma-u.5 for 100805409	gma-u.5 for 100802276	gma-u.5 for 100790416	sly-u.5 for 101260507	sly-u.5 for 101246331	sly-u.5 for 101262982	bra-r.6 for 103835210	bra-r.6 for 103836409	bra-r.6 for 103840394	vvi-u.5 for 100260305	vvi-u.5 for 100243011	ppo-u.5 for 18098201	ppo-u.5 for 7489334	mtr-u.5 for 11416078	mtr-u.5 for 11408739	ghi-r.1 for 107940111	ghi-r.1 for 107936068	ghi-r.1 for 107930377	bna-r.1 for 111199209	bna-r.1 for 125601469	bna-r.1 for 106446878	sot-r.1 for 102587535	sot-r.1 for 102596683	sot-r.1 for 102599579	cit-r.1 for 102623773	cit-r.1 for 102629725	nta-r.1 for 107768579	nta-r.1 for 107830416	nta-r.1 for 107780696	cre-r.1 for CHLRE_12g484150v5

Ortholog

Ortholog ID: 1010

Species

sbi

zma

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

Function^*

serine/threonine-protein phosphatase 6 regulatory subunit 3

serine/threonine-protein phosphatase 6 regulatory subunit 3-like

uncharacterized LOC100217253

SIT4 phosphatase-associated family protein

uncharacterized LOC4339795

uncharacterized LOC4337029

uncharacterized LOC4327657

serine/threonine-protein phosphatase 6 regulatory subunit 3

serine/threonine-protein phosphatase 6 regulatory subunit 3-like

serine/threonine-protein phosphatase 6 regulatory subunit 3

SIT4 phosphatase-associated family protein

serine/threonine-protein phosphatase 6 regulatory subunit 3

uncharacterized LOC101246331

uncharacterized LOC101262982

uncharacterized LOC101262924

serine/threonine-protein phosphatase 6 regulatory subunit 3

uncharacterized LOC100260305

uncharacterized LOC100243011

uncharacterized LOC18098201

uncharacterized LOC7489334

serine/threonine-protein phosphatase 6 regulatory subunit 3

serine/threonine-protein phosphatase 6 regulatory subunit 2

serine/threonine-protein phosphatase 6 regulatory subunit 3

serine/threonine-protein phosphatase 6 regulatory subunit 3-like

serine/threonine-protein phosphatase 6 regulatory subunit 3

serine/threonine-protein phosphatase 6 regulatory subunit 3-like

uncharacterized LOC102623773

uncharacterized LOC102629725

uncharacterized LOC107768579

uncharacterized LOC107786505

uncharacterized LOC107828750

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04120	Ubiquitin mediated proteolysis	2
sbi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04120	Ubiquitin mediated proteolysis	3
sbi04141	Protein processing in endoplasmic reticulum	2
sbi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03015	mRNA surveillance pathway	3
zma03013	Nucleocytoplasmic transport	2
zma04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03015	mRNA surveillance pathway	4
zma03082	ATP-dependent chromatin remodeling	3
zma03013	Nucleocytoplasmic transport	2
zma03040	Spliceosome	2
zma04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03013	Nucleocytoplasmic transport	2
zma00562	Inositol phosphate metabolism	2
zma04070	Phosphatidylinositol signaling system	2
zma04145	Phagosome	2
zma00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04141	Protein processing in endoplasmic reticulum	2
osa04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03083	Polycomb repressive complex	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03083	Polycomb repressive complex	3
osa03013	Nucleocytoplasmic transport	2
osa03015	mRNA surveillance pathway	2
osa04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03015	mRNA surveillance pathway	4
tae04382	Cornified envelope formation	3
tae03460	Fanconi anemia pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03015	mRNA surveillance pathway	3
tae04382	Cornified envelope formation	3
tae03460	Fanconi anemia pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00562	Inositol phosphate metabolism	3
tae00564	Glycerophospholipid metabolism	3
tae04070	Phosphatidylinositol signaling system	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03050	Proteasome	7
bdi03015	mRNA surveillance pathway	2
bdi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	2
ath03013	Nucleocytoplasmic transport	2
ath03015	mRNA surveillance pathway	2
ath03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04144	Endocytosis	2
gma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03013	Nucleocytoplasmic transport	3
gma03015	mRNA surveillance pathway	3
gma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	3
gma03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03013	Nucleocytoplasmic transport	2
sly03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	4
bra03013	Nucleocytoplasmic transport	2
bra03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra01240	Biosynthesis of cofactors	3
bra00053	Ascorbate and aldarate metabolism	2
bra03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	4
vvi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03420	Nucleotide excision repair	2
vvi04120	Ubiquitin mediated proteolysis	2
vvi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03013	Nucleocytoplasmic transport	2
ghi03015	mRNA surveillance pathway	2
ghi04141	Protein processing in endoplasmic reticulum	2
ghi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03430	Mismatch repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00010	Glycolysis / Gluconeogenesis	6
bna00240	Pyrimidine metabolism	3
bna01232	Nucleotide metabolism	3
bna03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03013	Nucleocytoplasmic transport	2
sot03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04120	Ubiquitin mediated proteolysis	2
sot04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	5
nta03060	Protein export	2
nta04141	Protein processing in endoplasmic reticulum	2
nta03013	Nucleocytoplasmic transport	2
nta03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04120	Ubiquitin mediated proteolysis	6
nta03083	Polycomb repressive complex	3
nta03250	Viral life cycle - HIV-1	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03083	Polycomb repressive complex	2
nta03250	Viral life cycle - HIV-1	2
nta04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03040	Spliceosome	2

Expression

Expression pattern

Entrez Gene ID^*

8078653

110436281

110430345

100217253

100384768

100383205

4339795

4337029

4327657

123078472

123070013

123054605

123443782

123427798

100822811

100827579

823655

837314

100805409

100789286

100777597

101246331

101262982

101262924

103864882

103871546

103828806

100260305

100243011

18098201

7489334

11416078

11408739

107940111

107930377

107906313

106446878

106380561

106367272

102587535

102596683

102599579

102623773

102629725

107768579

107786505

107828750

5728729

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Species	sbi	zma	osa	tae	hvu	bdi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	3	3	3	3	2	2	3	3	3	3	2	2	2	3	3	3	2	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 8078653 (sbi-r.1 coexpression data)

Top 50 enrichment test to 8078653 (sbi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**