ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
sbi-r.1	8079263	F-box protein At4g18380
sbi-r.1	8067488	F-box protein At5g46170
sbi-r.1	8054901	F-box protein At4g18380
zma-u.5	103630579	F-box protein
zma-u.5	100284879	uncharacterized LOC100284879
zma-u.5	100284740	F-box domain containing protein
osa-u.5	4339280	F-box protein At5g46170
osa-u.5	4324608	F-box protein At4g18380
tae-r.2	123062343	F-box protein At5g46170
tae-r.2	123062190	F-box protein At4g18380
tae-r.2	123070925	F-box protein At5g46170
hvu-r.1	123447488	F-box protein At5g46170-like
hvu-r.1	123444521	F-box protein At5g46170-like
bdi-r.1	100842849	F-box protein At5g46170
bdi-r.1	100840624	F-box protein At4g18380
ath-u.5	AT4G18380	F-box family protein
ath-u.5	AT5G46170	F-box family protein
ath-u.5	AT1G30200	F-box family protein
gma-u.5	100802298	F-box protein At5g46170
gma-u.5	100794477	F-box protein At5g46170
sly-u.5	101248164	F-box protein At5g46170
sly-u.5	101247348	F-box protein At5g46170
bra-r.6	103840426	F-box protein At1g30200
bra-r.6	103827750	F-box protein At5g46170
bra-r.6	103856300	F-box protein At4g18380
vvi-u.5	100251447	F-box protein At5g46170
ppo-u.5	7490831	F-box protein At5g46170
ppo-u.5	7495309	F-box protein At5g46170
mtr-u.5	120579877	F-box protein At5g46170-like
mtr-u.5	11439322	F-box protein At5g46170
ghi-r.1	121218673	F-box protein At5g46170
ghi-r.1	121222326	F-box protein At5g46170
ghi-r.1	107960264	F-box protein At5g46170
bna-r.1	106372074	F-box protein At1g30200
bna-r.1	106362441	F-box protein At1g30200
bna-r.1	125578140	F-box protein At1g30200-like
sot-r.1	102581893	F-box protein At5g46170
sot-r.1	102584855	F-box protein At5g46170-like
cit-r.1	102617241	F-box protein At5g46170
nta-r.1	107813338	F-box protein At4g18380
nta-r.1	107781028	F-box protein At5g46170
nta-r.1	107777007	F-box protein At4g18380

Top 50 coexpressed genes to 8079263 (sbi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 8079263 (sbi-r.1 coexpression data)

CoexMap"8079263"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

GO:0005515 [list] [network] protein binding

(4172 genes)

IEA

Protein

XP_002458563.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 4, nucl 3, cyto_plas 3

(predict for XP_002458563.1)

Subcellular
localization
TargetP

other 9

(predict for XP_002458563.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sbi-r.1 for 8079263	sbi-r.1 for 8067488	sbi-r.1 for 8054901	zma-u.5 for 103630579	zma-u.5 for 100284879	zma-u.5 for 100284740	osa-u.5 for 4339280	osa-u.5 for 4324608	tae-r.2 for 123062343	tae-r.2 for 123062190	tae-r.2 for 123070925	hvu-r.1 for 123447488	hvu-r.1 for 123444521	bdi-r.1 for 100842849	bdi-r.1 for 100840624	ath-u.5 for AT4G18380	ath-u.5 for AT5G46170	ath-u.5 for AT1G30200	gma-u.5 for 100802298	gma-u.5 for 100794477	sly-u.5 for 101248164	sly-u.5 for 101247348	bra-r.6 for 103840426	bra-r.6 for 103827750	bra-r.6 for 103856300	vvi-u.5 for 100251447	ppo-u.5 for 7490831	ppo-u.5 for 7495309	mtr-u.5 for 120579877	mtr-u.5 for 11439322	ghi-r.1 for 121218673	ghi-r.1 for 121222326	ghi-r.1 for 107960264	bna-r.1 for 106372074	bna-r.1 for 106362441	bna-r.1 for 125578140	sot-r.1 for 102581893	sot-r.1 for 102584855	cit-r.1 for 102617241	nta-r.1 for 107813338	nta-r.1 for 107781028	nta-r.1 for 107777007

Ortholog

Ortholog ID: 2571

Species

sbi

zma

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

Symbol

Function^*

F-box protein At4g18380

F-box protein At5g46170

F-box protein At4g18380

uncharacterized LOC100284879

F-box domain containing protein

uncharacterized LOC100280529

F-box protein At5g46170

F-box protein At4g18380

F-box protein At5g46170

F-box protein At4g18380

F-box protein At5g46170

F-box protein At5g46170-like

F-box protein At5g46170

F-box protein At4g18380

F-box family protein

F-box protein At5g46170

F-box protein At1g30200

F-box protein At5g46170

F-box protein At5g46170-like

F-box protein At5g46170

F-box protein At1g30200

F-box protein At5g46170-like

F-box protein At5g46170

F-box protein At5g46170-like

F-box protein At5g46170

F-box protein At4g18380

F-box protein At5g46170

F-box protein At4g18380-like

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04141	Protein processing in endoplasmic reticulum	3
zma00510	N-Glycan biosynthesis	2
zma00513	Various types of N-glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04141	Protein processing in endoplasmic reticulum	3
tae00500	Starch and sucrose metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	4
bra04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04141	Protein processing in endoplasmic reticulum	2
ppo03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00510	N-Glycan biosynthesis	3
cit00513	Various types of N-glycan biosynthesis	3
cit04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00260	Glycine, serine and threonine metabolism	2
nta00630	Glyoxylate and dicarboxylate metabolism	2
nta01200	Carbon metabolism	2
nta03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03015	mRNA surveillance pathway	6
nta04082	Neuroactive ligand signaling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00260	Glycine, serine and threonine metabolism	2
nta00630	Glyoxylate and dicarboxylate metabolism	2
nta01200	Carbon metabolism	2
nta03040	Spliceosome	2

Expression

Expression pattern

Entrez Gene ID^*

8079263

8067488

8054901

100284879

100284740

100280529

4339280

4324608

123062343

123079310

123139604

123447488

123444521

100842849

100840624

827567

834659

839900

100802298

100794477

101248164

101247348

103840426

103827750

103853690

100251447

7490831

7495309

120579877

11439322

121218673

107959964

107913799

106362441

111198767

106407232

102581893

102584855

102617241

107813338

107781028

107821320

The preparation time of this page was 0.2 [sec].


Species	sbi	zma	osa	tae	hvu	bdi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	3	3	2	3	2	2	3	2	2	3	1	2	2	3	3	2	1	3	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 8079263 (sbi-r.1 coexpression data)

Top 50 enrichment test to 8079263 (sbi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**