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Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   8079384   H/ACA ribonucleoprotein complex subunit 4 
 sbi-r.1   8072420   H/ACA ribonucleoprotein complex subunit 4 
 zma-u.5   107521957   uncharacterized LOC107521957 
 zma-u.5   103649956   H/ACA ribonucleoprotein complex subunit 4 
 zma-u.5   100502498   H/ACA ribonucleoprotein complex subunit 4 
 osa-u.5   4344029   H/ACA ribonucleoprotein complex subunit 4 
 osa-u.5   4332935   H/ACA ribonucleoprotein complex subunit 4 
 tae-r.2   123044066   H/ACA ribonucleoprotein complex subunit 4 
 tae-r.2   123044067   H/ACA ribonucleoprotein complex subunit 4 
 tae-r.2   123051941   H/ACA ribonucleoprotein complex subunit 4 
 hvu-r.1   123425131   H/ACA ribonucleoprotein complex subunit 4-like 
 hvu-r.1   123425133   H/ACA ribonucleoprotein complex subunit 4-like 
 bdi-r.1   100838391   H/ACA ribonucleoprotein complex subunit 4 
 bdi-r.1   100832816   H/ACA ribonucleoprotein complex subunit 4 
 ath-u.5   NAP57   homologue of NAP57 
 gma-u.5   100806355   H/ACA ribonucleoprotein complex subunit 4 
 gma-u.5   100780706   H/ACA ribonucleoprotein complex subunit 4 
 sly-u.5   101255259   H/ACA ribonucleoprotein complex subunit 4 
 bra-r.6   103853527   H/ACA ribonucleoprotein complex subunit 4 
 bra-r.6   103830088   H/ACA ribonucleoprotein complex subunit 4 
 vvi-u.5   100258019   H/ACA ribonucleoprotein complex subunit 4 
 ppo-u.5   7458946   H/ACA ribonucleoprotein complex subunit 4 
 ppo-u.5   7473584   H/ACA ribonucleoprotein complex subunit 4 
 mtr-u.5   25492817   H/ACA ribonucleoprotein complex subunit 4 
 ghi-r.1   107891348   H/ACA ribonucleoprotein complex subunit 4 
 ghi-r.1   107889430   H/ACA ribonucleoprotein complex subunit 4 
 bna-r.1   106410714   H/ACA ribonucleoprotein complex subunit 4-like 
 bna-r.1   106353240   H/ACA ribonucleoprotein complex subunit 4 
 bna-r.1   106391187   H/ACA ribonucleoprotein complex subunit 4-like 
 sot-r.1   102596957   H/ACA ribonucleoprotein complex subunit 4 
 cit-r.1   102608573   H/ACA ribonucleoprotein complex subunit 4 
 nta-r.1   107814582   H/ACA ribonucleoprotein complex subunit 4-like 
 nta-r.1   107765583   H/ACA ribonucleoprotein complex subunit 4 
 cre-r.1   CHLRE_03g172950v5   uncharacterized protein 

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Top 50 coexpressed genes to 8079384 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 8079384 (sbi-r.1 coexpression data)

CoexMap"8079384"


sbiLOC8079384 | Entrez gene ID : 8079384      
Species sbi zma osa tae hvu bdi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 2 3 2 3 2 2 1 2 1 2 1 2 1 2 3 1 1 2 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sbi03008 [list] [network] Ribosome biogenesis in eukaryotes (91 genes)
GO BP
GO:0000495 [list] [network] box H/ACA sno(s)RNA 3'-end processing  (3 genes)  IEA  
GO:0031120 [list] [network] snRNA pseudouridine synthesis  (7 genes)  IEA  
GO:1990481 [list] [network] mRNA pseudouridine synthesis  (7 genes)  IEA  
GO:0031118 [list] [network] rRNA pseudouridine synthesis  (8 genes)  IEA  
GO CC
GO:0031429 [list] [network] box H/ACA snoRNP complex  (8 genes)  IEA  
GO MF
GO:0009982 [list] [network] pseudouridine synthase activity  (21 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (1243 genes)  IEA  
Protein XP_002463248.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  chlo 1,  nucl 1,  mito 1,  plas 1,  cysk_nucl 1,  mito_plas 1  (predict for XP_002463248.1)
Subcellular
localization
TargetP
other 8,  chlo 4  (predict for XP_002463248.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
8079384
sbi-r.1
for
8072420
zma-u.5
for
107521957
zma-u.5
for
103649956
zma-u.5
for
100502498
osa-u.5
for
4344029
osa-u.5
for
4332935
tae-r.2
for
123044066
tae-r.2
for
123044067
tae-r.2
for
123051941
hvu-r.1
for
123425131
hvu-r.1
for
123425133
bdi-r.1
for
100838391
bdi-r.1
for
100832816
ath-u.5
for
NAP57
gma-u.5
for
100806355
gma-u.5
for
100780706
sly-u.5
for
101255259
bra-r.6
for
103853527
bra-r.6
for
103830088
vvi-u.5
for
100258019
ppo-u.5
for
7458946
ppo-u.5
for
7473584
mtr-u.5
for
25492817
ghi-r.1
for
107891348
ghi-r.1
for
107889430
bna-r.1
for
106410714
bna-r.1
for
106353240
bna-r.1
for
106391187
sot-r.1
for
102596957
cit-r.1
for
102608573
nta-r.1
for
107814582
nta-r.1
for
107765583
cre-r.1
for
CHLRE_03g172950v5


Ortholog ID: 5332
Species sbi sbi zma zma zma osa osa tae tae tae hvu hvu bdi bdi ath gma gma sly bra bra vvi ppo ppo mtr ghi ghi bna bna bna sot cit nta nta cre
Symbol LOC8079384 LOC8072420 LOC107521957 LOC103649956 LOC100502498 LOC4344029 LOC4332935 LOC123051941 LOC123187822 LOC123187823 LOC123425131 LOC123425133 LOC100838391 LOC100832816 NAP57 LOC100806355 LOC100780706 LOC101255259 LOC103853527 LOC103830088 LOC100258019 LOC7458946 LOC7473584 LOC25492817 LOC107891348 LOC107889430 LOC106353240 LOC106391187 LOC106401912 LOC102596957 LOC102608573 LOC107814582 LOC107765583 CHLRE_03g172950v5
Function* H/ACA ribonucleoprotein complex subunit 4 H/ACA ribonucleoprotein complex subunit 4 uncharacterized LOC107521957 H/ACA ribonucleoprotein complex subunit 4 H/ACA ribonucleoprotein complex subunit 4 H/ACA ribonucleoprotein complex subunit 4 H/ACA ribonucleoprotein complex subunit 4 H/ACA ribonucleoprotein complex subunit 4 H/ACA ribonucleoprotein complex subunit 4 H/ACA ribonucleoprotein complex subunit 4 H/ACA ribonucleoprotein complex subunit 4-like H/ACA ribonucleoprotein complex subunit 4-like H/ACA ribonucleoprotein complex subunit 4 H/ACA ribonucleoprotein complex subunit 4 homologue of NAP57 H/ACA ribonucleoprotein complex subunit 4 H/ACA ribonucleoprotein complex subunit 4 H/ACA ribonucleoprotein complex subunit 4 H/ACA ribonucleoprotein complex subunit 4 H/ACA ribonucleoprotein complex subunit 4 H/ACA ribonucleoprotein complex subunit 4 H/ACA ribonucleoprotein complex subunit 4 H/ACA ribonucleoprotein complex subunit 4 H/ACA ribonucleoprotein complex subunit 4 H/ACA ribonucleoprotein complex subunit 4 H/ACA ribonucleoprotein complex subunit 4 H/ACA ribonucleoprotein complex subunit 4 H/ACA ribonucleoprotein complex subunit 4-like H/ACA ribonucleoprotein complex subunit 4-like H/ACA ribonucleoprotein complex subunit 4 H/ACA ribonucleoprotein complex subunit 4 H/ACA ribonucleoprotein complex subunit 4-like H/ACA ribonucleoprotein complex subunit 4 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 6
tae03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 4
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 9
bra03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 5
vvi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 8
nta03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 8
nta03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 7
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 8079384 8072420 107521957 103649956 100502498 4344029 4332935 123051941 123187822 123187823 123425131 123425133 100838391 100832816 824882 100806355 100780706 101255259 103853527 103830088 100258019 7458946 7473584 25492817 107891348 107889430 106353240 106391187 106401912 102596957 102608573 107814582 107765583 5728904
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