ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
sbi-r.1	8080587	60S ribosomal protein L21-2
sbi-r.1	8059262	60S ribosomal protein L21-2
zma-u.5	100194057	60S ribosomal protein L21-like
zma-u.5	100281780	60S ribosomal protein L21-like
zma-u.5	100192855	60S ribosomal protein L21-like
osa-u.5	9266412	large ribosomal subunit protein eL21x/eL21w
osa-u.5	4348839	large ribosomal subunit protein eL21x/eL21w
tae-r.2	123044938	60S ribosomal protein L21-1
tae-r.2	123098986	60S ribosomal protein L21-2
tae-r.2	123120178	60S ribosomal protein L21-1
hvu-r.1	123430433	60S ribosomal protein L21-1
hvu-r.1	123449862	60S ribosomal protein L21-2-like
bdi-r.1	100828513	60S ribosomal protein L21-1
bdi-r.1	100836076	60S ribosomal protein L21-1
ath-u.5	AT1G09590	Translation protein SH3-like family protein
ath-u.5	AT1G09690	Translation protein SH3-like family protein
ath-u.5	AT1G57660	Translation protein SH3-like family protein
gma-u.5	100500046	uncharacterized LOC100500046
gma-u.5	100305629	putative 60S ribosomal protein L21
sly-u.5	101257121	large ribosomal subunit protein eL21x/eL21w
sly-u.5	101265689	large ribosomal subunit protein eL21z/eL21y
bra-r.6	103871743	60S ribosomal protein L21-1
bra-r.6	103871734	60S ribosomal protein L21-1
bra-r.6	103836318	60S ribosomal protein L21-1
vvi-u.5	100243484	large ribosomal subunit protein eL21z/eL21y
vvi-u.5	100262509	60S ribosomal protein L21-1-like
vvi-u.5	100241755	large ribosomal subunit protein eL21z/eL21y
ppo-u.5	7479510	60S ribosomal protein L21-1
ppo-u.5	7467867	60S ribosomal protein L21-1
ppo-u.5	7469902	60S ribosomal protein L21-1
mtr-u.5	25484261	60S ribosomal protein L21-1
mtr-u.5	25499569	60S ribosomal protein L21-1
ghi-r.1	107889489	60S ribosomal protein L21-1
ghi-r.1	107889487	60S ribosomal protein L21-1
ghi-r.1	107899215	60S ribosomal protein L21-1
bna-r.1	125591341	60S ribosomal protein L21-1-like
bna-r.1	106390300	60S ribosomal protein L21-2
bna-r.1	106453146	60S ribosomal protein L21-1-like
sot-r.1	102599930	60S ribosomal protein L21-1-like
sot-r.1	102598242	60S ribosomal protein L21-2
cit-r.1	102615982	60S ribosomal protein L21-2
nta-r.1	107787770	large ribosomal subunit protein eL21z/eL21y
nta-r.1	107759160	large ribosomal subunit protein eL21x/eL21w
nta-r.1	107763612	large ribosomal subunit protein eL21z/eL21y-like
cre-r.1	CHLRE_06g278135v5	uncharacterized protein

Top 50 coexpressed genes to 8080587 (sbi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 8080587 (sbi-r.1 coexpression data)

CoexMap"8080587"

[Cytoscape]

Annotation

functional annotation

KEGG

sbi03010 [list] [network] Ribosome (360 genes)

GO BP

GO:0006412 [list] [network] translation

(459 genes)

IEA

GO CC

GO:0022625 [list] [network] cytosolic large ribosomal subunit	(113 genes)	IEA
GO:0005840 [list] [network] ribosome	(326 genes)	IEA

GO MF

GO:0003735 [list] [network] structural constituent of ribosome

(320 genes)

IEA

Protein

XP_002468534.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 4, cyto 3, nucl 2, mito 1, cyto_pero 1, cyto_E.R. 1, cyto_plas 1

(predict for XP_002468534.1)

Subcellular
localization
TargetP

mito 9

(predict for XP_002468534.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sbi-r.1 for 8080587	sbi-r.1 for 8059262	zma-u.5 for 100194057	zma-u.5 for 100281780	zma-u.5 for 100192855	osa-u.5 for 9266412	osa-u.5 for 4348839	tae-r.2 for 123044938	tae-r.2 for 123098986	tae-r.2 for 123120178	hvu-r.1 for 123430433	hvu-r.1 for 123449862	bdi-r.1 for 100828513	bdi-r.1 for 100836076	ath-u.5 for AT1G09590	ath-u.5 for AT1G09690	ath-u.5 for AT1G57660	gma-u.5 for 100500046	gma-u.5 for 100305629	sly-u.5 for 101257121	sly-u.5 for 101265689	bra-r.6 for 103871743	bra-r.6 for 103871734	bra-r.6 for 103836318	vvi-u.5 for 100243484	vvi-u.5 for 100262509	vvi-u.5 for 100241755	ppo-u.5 for 7479510	ppo-u.5 for 7467867	ppo-u.5 for 7469902	mtr-u.5 for 25484261	mtr-u.5 for 25499569	ghi-r.1 for 107889489	ghi-r.1 for 107889487	ghi-r.1 for 107899215	bna-r.1 for 125591341	bna-r.1 for 106390300	bna-r.1 for 106453146	sot-r.1 for 102599930	sot-r.1 for 102598242	cit-r.1 for 102615982	nta-r.1 for 107787770	nta-r.1 for 107759160	nta-r.1 for 107763612	cre-r.1 for CHLRE_06g278135v5

Ortholog

Ortholog ID: 1641

Species

sbi

zma

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

Function^*

60S ribosomal protein L21-2

60S ribosomal protein L21-like

large ribosomal subunit protein eL21x/eL21w

60S ribosomal protein L21-1

60S ribosomal protein L21-2

60S ribosomal protein L21-1

60S ribosomal protein L21-2-like

60S ribosomal protein L21-1

Translation protein SH3-like family protein

uncharacterized LOC100500046

putative 60S ribosomal protein L21

large ribosomal subunit protein eL21x/eL21w

large ribosomal subunit protein eL21z/eL21y

60S ribosomal protein L21-1

60S ribosomal protein L21-1-like

large ribosomal subunit protein eL21z/eL21y

60S ribosomal protein L21-1-like

large ribosomal subunit protein eL21z/eL21y

60S ribosomal protein L21-1

60S ribosomal protein L21-1-like

60S ribosomal protein L21-2

large ribosomal subunit protein eL21x/eL21w

large ribosomal subunit protein eL21z/eL21y-like

large ribosomal subunit protein eL21x/eL21w

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	19

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	20

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	21

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	21

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	21

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03010	Ribosome	20
osa04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03010	Ribosome	20
osa04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	16
tae00230	Purine metabolism	3
tae00240	Pyrimidine metabolism	3
tae01232	Nucleotide metabolism	3
tae01240	Biosynthesis of cofactors	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	5
tae03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	10
tae00230	Purine metabolism	3
tae00240	Pyrimidine metabolism	3
tae01232	Nucleotide metabolism	3
tae01240	Biosynthesis of cofactors	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03010	Ribosome	19

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03010	Ribosome	19

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03010	Ribosome	19

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03010	Ribosome	21

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03010	Ribosome	21
ath04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03010	Ribosome	21
ath04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03010	Ribosome	20
ath04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	14
gma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	21

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	20

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	19

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	19

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	18

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	19

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	18

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	19

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	16

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	16
ppo04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	21

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	20

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	18
mtr04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	21

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	16
ghi04120	Ubiquitin mediated proteolysis	8
ghi03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03010	Ribosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03010	Ribosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03010	Ribosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	19

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	19

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	19

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	19

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	7
nta00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	16
nta03018	RNA degradation	2
nta03040	Spliceosome	2
nta04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03010	Ribosome	18

Expression

Expression pattern

Entrez Gene ID^*

8080587

8059262

100194057

100192855

100192783

9266412

4348839

123044938

123098986

123120178

123430433

123449862

100828513

100836076

837486

837497

842142

100500046

100305629

101257121

101265689

103836318

103843345

103843335

100243484

100262509

100241755

7467867

7469902

7496511

25484261

25499569

107891242

107891243

107922438

106346254

106362372

106402049

102599930

102598242

102615982

107759160

107796277

107791104

5723657

The preparation time of this page was 0.3 [sec].


Species	sbi	zma	osa	tae	hvu	bdi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	2	3	2	3	2	2	3	2	2	3	3	3	2	3	3	2	1	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 8080587 (sbi-r.1 coexpression data)

Top 50 enrichment test to 8080587 (sbi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**