ATTED-II : GeneCoexpression result

Species	Gene	Description
sbi-r.1	8082284	R3H domain-containing protein 1
zma-u.5	100272573	R3H domain protein
zma-u.5	100192048	R3H domain protein
osa-u.5	4326456	uncharacterized LOC4326456
tae-r.2	123077241	uncharacterized LOC123077241
tae-r.2	123068740	uncharacterized LOC123068740
tae-r.2	123060236	uncharacterized LOC123060236
hvu-r.1	123439405	uncharacterized LOC123439405
bdi-r.1	100822764	uncharacterized LOC100822764
gma-u.5	100801478	uncharacterized LOC100801478
gma-u.5	100793409	uncharacterized LOC100793409
sly-u.5	101259635	uncharacterized LOC101259635
vvi-u.5	104879148	uncharacterized LOC104879148
ppo-u.5	7477703	uncharacterized LOC7477703
mtr-u.5	25484605	uncharacterized LOC25484605
ghi-r.1	107909073	uncharacterized LOC107909073
ghi-r.1	107928246	uncharacterized LOC107928246
ghi-r.1	121226522	uncharacterized LOC121226522
sot-r.1	102593114	uncharacterized LOC102593114
cit-r.1	102615571	uncharacterized LOC102615571
nta-r.1	107761660	uncharacterized LOC107761660
nta-r.1	107800659	uncharacterized LOC107800659

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

GO:0003676 [list] [network] nucleic acid binding

(3505 genes)

IEA

Protein

XP_002465268.1 [sequence] [blastp]
XP_021307589.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 5, cyto 3, nucl_plas 3	(predict for XP_002465268.1)
cyto 4, nucl 4, mito 1	(predict for XP_021307589.1)

Subcellular
localization
TargetP

other 5	(predict for XP_002465268.1)
other 5	(predict for XP_021307589.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sbi-r.1 for 8082284	zma-u.5 for 100272573	zma-u.5 for 100192048	osa-u.5 for 4326456	tae-r.2 for 123077241	tae-r.2 for 123068740	tae-r.2 for 123060236	hvu-r.1 for 123439405	bdi-r.1 for 100822764	gma-u.5 for 100801478	gma-u.5 for 100793409	sly-u.5 for 101259635	vvi-u.5 for 104879148	ppo-u.5 for 7477703	mtr-u.5 for 25484605	ghi-r.1 for 107909073	ghi-r.1 for 107928246	ghi-r.1 for 121226522	sot-r.1 for 102593114	cit-r.1 for 102615571	nta-r.1 for 107761660	nta-r.1 for 107800659

Ortholog

Ortholog ID: 11834

Species

sbi

zma

osa

tae

hvu

bdi

gma

sly

vvi

ppo

mtr

ghi

sot

cit

nta

Symbol

Function^*

R3H domain-containing protein 1

R3H domain protein

uncharacterized LOC4326456

uncharacterized LOC123077241

uncharacterized LOC123068740

uncharacterized LOC123060236

uncharacterized LOC123439405

uncharacterized LOC100822764

uncharacterized LOC100801478

uncharacterized LOC100793409

uncharacterized LOC101259635

uncharacterized LOC104879148

uncharacterized LOC7477703

uncharacterized LOC25484605

uncharacterized LOC107909073

uncharacterized LOC107928246

uncharacterized LOC121226522

uncharacterized LOC102593114

uncharacterized LOC102615571

uncharacterized LOC107761660

uncharacterized LOC107800659

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03083	Polycomb repressive complex	2
zma03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04144	Endocytosis	3
zma00562	Inositol phosphate metabolism	2
zma04070	Phosphatidylinositol signaling system	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	6
bdi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	3
vvi01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	2
ppo04146	Peroxisome	2
ppo03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03015	mRNA surveillance pathway	6
ghi04382	Cornified envelope formation	4
ghi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03015	mRNA surveillance pathway	6
ghi04382	Cornified envelope formation	4
ghi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03015	mRNA surveillance pathway	6
ghi04382	Cornified envelope formation	4
ghi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03013	Nucleocytoplasmic transport	2
nta03015	mRNA surveillance pathway	2

Expression

Expression pattern

Entrez Gene ID^*

8082284

100272573

100192048

4326456

123077241

123068740

123060236

123439405

100822764

100801478

100793409

101259635

104879148

7477703

25484605

107909073

107928246

121226522

102593114

102615571

107761660

107800659

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 8082284 (sbi-r.1 coexpression data)

Top 50 enrichment test to 8082284 (sbi-r.1 coexpression data)


Species	sbi	zma	osa	tae	hvu	bdi	gma	sly	vvi	ppo	mtr	ghi	sot	cit	nta	cre	bna	bra	ath
Paralog	1	2	1	3	1	1	2	1	1	1	1	3	1	1	2	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 8082284 (sbi-r.1 coexpression data)

Top 50 enrichment test to 8082284 (sbi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**