ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
sbi-r.1	8082620	protein HUA2-LIKE 2
sbi-r.1	8072226	protein HUA2-LIKE 3
zma-u.5	103653602	uncharacterized LOC103653602
zma-u.5	103639119	protein HUA2-LIKE 2
zma-u.5	103644661	protein HUA2-LIKE 2
osa-u.5	9267935	protein HUA2-LIKE 3
osa-u.5	4344141	protein HUA2-LIKE 2
tae-r.2	123091891	protein HUA2-LIKE 2
tae-r.2	123187693	protein HUA2-LIKE 3
tae-r.2	123043925	protein HUA2-LIKE 3
hvu-r.1	123448478	protein HUA2-LIKE 2-like
hvu-r.1	123424975	protein HUA2-LIKE 3-like
bdi-r.1	100833126	protein HUA2-LIKE 2
bdi-r.1	100821675	protein HUA2-LIKE 2
ath-u.5	AT2G48160	Tudor/PWWP/MBT domain-containing protein
ath-u.5	AT3G63070	Tudor/PWWP/MBT domain-containing protein
gma-u.5	100799006	protein HUA2-LIKE 2
gma-u.5	102664053	protein HUA2-LIKE 2
gma-u.5	100803427	protein HUA2-LIKE 2
sly-u.5	101258186	protein HUA2-LIKE 2
bra-r.6	103830385	protein HUA2-LIKE 3
bra-r.6	103862749	protein HUA2-LIKE 3
vvi-u.5	100261323	protein HUA2-LIKE 2
ppo-u.5	18105301	protein HUA2-LIKE 2
mtr-u.5	11433286	protein HUA2-LIKE 3
mtr-u.5	25499098	protein HUA2-LIKE 2
ghi-r.1	107923946	protein HUA2-LIKE 3
ghi-r.1	107923600	protein HUA2-LIKE 3
ghi-r.1	107912417	protein HUA2-LIKE 3
bna-r.1	106353330	protein HUA2-LIKE 3
bna-r.1	106444950	protein HUA2-LIKE 3
bna-r.1	106410466	protein HUA2-LIKE 3
sot-r.1	102590909	protein HUA2-LIKE 2
cit-r.1	102624781	protein HUA2-LIKE 2-like
nta-r.1	107764551	protein HUA2-LIKE 3
nta-r.1	107809062	protein HUA2-LIKE 3
cre-r.1	CHLRE_10g458450v5	uncharacterized protein

Top 50 coexpressed genes to 8082620 (sbi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 8082620 (sbi-r.1 coexpression data)

CoexMap"8082620"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0006357 [list] [network] regulation of transcription by RNA polymerase II

(365 genes)

IEA

GO CC

GO:0005634 [list] [network] nucleus

(2977 genes)

IEA

GO MF

GO:0003712 [list] [network] transcription coregulator activity	(113 genes)	IEA
GO:0003690 [list] [network] double-stranded DNA binding	(461 genes)	IEA

Protein

XP_021307387.1 [sequence] [blastp]
XP_021307421.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 6, chlo 1, cyto 1, mito 1, cysk 1	(predict for XP_021307387.1)
nucl 6, chlo 1, cyto 1, mito 1, cysk 1	(predict for XP_021307421.1)

Subcellular
localization
TargetP

scret 6, mito 3	(predict for XP_021307387.1)
scret 6, mito 3	(predict for XP_021307421.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sbi-r.1 for 8082620	sbi-r.1 for 8072226	zma-u.5 for 103653602	zma-u.5 for 103639119	zma-u.5 for 103644661	osa-u.5 for 9267935	osa-u.5 for 4344141	tae-r.2 for 123091891	tae-r.2 for 123187693	tae-r.2 for 123043925	hvu-r.1 for 123448478	hvu-r.1 for 123424975	bdi-r.1 for 100833126	bdi-r.1 for 100821675	ath-u.5 for AT2G48160	ath-u.5 for AT3G63070	gma-u.5 for 100799006	gma-u.5 for 102664053	gma-u.5 for 100803427	sly-u.5 for 101258186	bra-r.6 for 103830385	bra-r.6 for 103862749	vvi-u.5 for 100261323	ppo-u.5 for 18105301	mtr-u.5 for 11433286	mtr-u.5 for 25499098	ghi-r.1 for 107923946	ghi-r.1 for 107923600	ghi-r.1 for 107912417	bna-r.1 for 106353330	bna-r.1 for 106444950	bna-r.1 for 106410466	sot-r.1 for 102590909	cit-r.1 for 102624781	nta-r.1 for 107764551	nta-r.1 for 107809062	cre-r.1 for CHLRE_10g458450v5

Ortholog

Ortholog ID: 4710

Species

sbi

zma

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

Function^*

protein HUA2-LIKE 2

protein HUA2-LIKE 3

uncharacterized LOC103653602

protein HUA2-LIKE 2

protein HUA2-LIKE 3

protein HUA2-LIKE 2

protein HUA2-LIKE 3

protein HUA2-LIKE 2

protein HUA2-LIKE 2-like

protein HUA2-LIKE 3-like

protein HUA2-LIKE 2

Tudor/PWWP/MBT domain-containing protein

protein HUA2-LIKE 2

protein HUA2-LIKE 3

protein HUA2-LIKE 2

protein HUA2-LIKE 3

protein HUA2-LIKE 2

protein HUA2-LIKE 3

protein HUA2-LIKE 3-like

protein HUA2-LIKE 2

protein HUA2-LIKE 2-like

protein HUA2-LIKE 3

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03083	Polycomb repressive complex	2
zma03250	Viral life cycle - HIV-1	2
zma00310	Lysine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04120	Ubiquitin mediated proteolysis	3
tae03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03015	mRNA surveillance pathway	3
tae04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04120	Ubiquitin mediated proteolysis	2
ath03083	Polycomb repressive complex	2
ath03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04120	Ubiquitin mediated proteolysis	2
gma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00310	Lysine degradation	4
gma04136	Autophagy - other	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03083	Polycomb repressive complex	2
bra03250	Viral life cycle - HIV-1	2
bra00310	Lysine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03015	mRNA surveillance pathway	2
cit03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04120	Ubiquitin mediated proteolysis	4
nta03083	Polycomb repressive complex	3
nta03250	Viral life cycle - HIV-1	3
nta03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03083	Polycomb repressive complex	3
nta03250	Viral life cycle - HIV-1	3
nta03040	Spliceosome	2
nta03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre00600	Sphingolipid metabolism	2
cre04382	Cornified envelope formation	2

Expression

Expression pattern

Entrez Gene ID^*

8082620

8072226

103653602

103639119

103644661

9267935

4344141

123091891

123043925

123051789

123448478

123424975

100833126

100821675

819428

825482

100799006

102664053

100803427

101258186

103830385

103862749

100261323

18105301

11433286

25499098

107923600

107912417

107912416

106353330

106444950

106369309

102590909

102624781

107764551

107809062

5723945

The preparation time of this page was 0.1 [sec].


Species	sbi	zma	osa	tae	hvu	bdi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	2	3	2	3	2	2	2	3	1	2	1	1	2	3	3	1	1	2	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 8082620 (sbi-r.1 coexpression data)

Top 50 enrichment test to 8082620 (sbi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**