ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
sbi-r.1	8082775	thioredoxin M-type, chloroplastic
sbi-r.1	8066203	thioredoxin M1, chloroplastic
sbi-r.1	8056042	thioredoxin M2, chloroplastic
sbi-r.1	110431322	thioredoxin-like
zma-u.5	542254	thioredoxin M1
zma-u.5	100284385	thioredoxin M-type
zma-u.5	100279286	putative thioredoxin superfamily protein
osa-u.5	9270622	thioredoxin M5, chloroplastic-like
osa-u.5	4330107	thioredoxin M1, chloroplastic-like
osa-u.5	4336484	thioredoxin M2, chloroplastic-like
tae-r.2	123147313	thioredoxin 1
tae-r.2	123055856	thioredoxin M2, chloroplastic
tae-r.2	123102800	thioredoxin M-type, chloroplastic-like
hvu-r.1	123427326	thioredoxin M2, chloroplastic-like
hvu-r.1	123411781	thioredoxin 1-like
hvu-r.1	123398470	thioredoxin M-type, chloroplastic
bdi-r.1	100830163	thioredoxin M4, chloroplastic-like
bdi-r.1	100835992	thioredoxin M2, chloroplastic
ath-u.5	TRX-M4	thioredoxin M-type 4
ath-u.5	ATHM2	Thioredoxin superfamily protein
gma-u.5	100305596	uncharacterized LOC100305596
gma-u.5	100818054	thioredoxin M1, chloroplastic
gma-u.5	100811845	thioredoxin
sly-u.5	101249435	uncharacterized LOC101249435
sly-u.5	101254317	uncharacterized LOC101254317
sly-u.5	101261858	uncharacterized LOC101261858
bra-r.6	103869926	thioredoxin M4, chloroplastic
bra-r.6	103859618	thioredoxin M4, chloroplastic
bra-r.6	103858694	thioredoxin M2, chloroplastic
vvi-u.5	100264263	thioredoxin
vvi-u.5	100252295	uncharacterized LOC100252295
vvi-u.5	100245250	uncharacterized LOC100245250
ppo-u.5	7469198	thioredoxin M-type, chloroplastic
ppo-u.5	7466424	thioredoxin M-type, chloroplastic
mtr-u.5	25501232	thioredoxin
mtr-u.5	25489759	thioredoxin 1
mtr-u.5	25487352	thioredoxin M4, chloroplastic
ghi-r.1	107948643	thioredoxin
ghi-r.1	107897113	thioredoxin M-type, chloroplastic
ghi-r.1	107898951	thioredoxin 1
bna-r.1	106438737	thioredoxin M2, chloroplastic-like
bna-r.1	125586980	thioredoxin M4, chloroplastic
bna-r.1	106377579	thioredoxin M2, chloroplastic
sot-r.1	102587966	thioredoxin-1-like
sot-r.1	102588026	thioredoxin-1
sot-r.1	102601133	thioredoxin-1-like
cit-r.1	102612554	thioredoxin M-type, chloroplastic-like
cit-r.1	102621218	uncharacterized LOC102621218
nta-r.1	107828114	uncharacterized LOC107828114
nta-r.1	107800160	uncharacterized LOC107800160
nta-r.1	107825796	uncharacterized LOC107825796

Top 50 coexpressed genes to 8082775 (sbi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 8082775 (sbi-r.1 coexpression data)

CoexMap"8082775"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0005737 [list] [network] cytoplasm

(4816 genes)

IEA

GO MF

GO:0016671 [list] [network] oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	(18 genes)	IEA
GO:0015035 [list] [network] protein-disulfide reductase activity	(29 genes)	IEA

Protein

XP_002442946.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 9, nucl 1, cyto 1, cyto_nucl 1

(predict for XP_002442946.1)

Subcellular
localization
TargetP

chlo 8

(predict for XP_002442946.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sbi-r.1 for 8082775	sbi-r.1 for 8066203	sbi-r.1 for 8056042	sbi-r.1 for 110431322	zma-u.5 for 542254	zma-u.5 for 100284385	zma-u.5 for 100279286	osa-u.5 for 9270622	osa-u.5 for 4330107	osa-u.5 for 4336484	tae-r.2 for 123147313	tae-r.2 for 123055856	tae-r.2 for 123102800	hvu-r.1 for 123427326	hvu-r.1 for 123411781	hvu-r.1 for 123398470	bdi-r.1 for 100830163	bdi-r.1 for 100835992	ath-u.5 for TRX-M4	ath-u.5 for ATHM2	gma-u.5 for 100305596	gma-u.5 for 100818054	gma-u.5 for 100811845	sly-u.5 for 101249435	sly-u.5 for 101254317	sly-u.5 for 101261858	bra-r.6 for 103869926	bra-r.6 for 103859618	bra-r.6 for 103858694	vvi-u.5 for 100264263	vvi-u.5 for 100252295	vvi-u.5 for 100245250	ppo-u.5 for 7469198	ppo-u.5 for 7466424	mtr-u.5 for 25501232	mtr-u.5 for 25489759	mtr-u.5 for 25487352	ghi-r.1 for 107948643	ghi-r.1 for 107897113	ghi-r.1 for 107898951	bna-r.1 for 106438737	bna-r.1 for 125586980	bna-r.1 for 106377579	sot-r.1 for 102587966	sot-r.1 for 102588026	sot-r.1 for 102601133	cit-r.1 for 102612554	cit-r.1 for 102621218	nta-r.1 for 107828114	nta-r.1 for 107800160	nta-r.1 for 107825796

Ortholog

Ortholog ID: 1054

Species

sbi

zma

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

Symbol

TRX-M4

ATHM2

THM1

Function^*

thioredoxin M-type, chloroplastic

thioredoxin M1, chloroplastic

thioredoxin-like

thioredoxin M1

thioredoxin M-type

thioredoxin M-type, chloroplastic-like

thioredoxin M5, chloroplastic-like

thioredoxin M1, chloroplastic-like

thioredoxin M2, chloroplastic-like

thioredoxin 1

thioredoxin M2, chloroplastic

thioredoxin M2, chloroplastic-like

thioredoxin 1-like

thioredoxin M-type, chloroplastic

thioredoxin M2, chloroplastic

thioredoxin M-type, chloroplastic

thioredoxin M-type 4

Thioredoxin superfamily protein

thioredoxin M-type 1

thioredoxin

uncharacterized LOC100526924

thioredoxin-like protein

uncharacterized LOC101249435

uncharacterized LOC101261858

uncharacterized LOC101268617

thioredoxin M4, chloroplastic

thioredoxin M2, chloroplastic

thioredoxin M-type, chloroplastic

thioredoxin

uncharacterized LOC100252295

uncharacterized LOC100245250

uncharacterized LOC18099015

thioredoxin

thioredoxin 1

thioredoxin M4, chloroplastic

thioredoxin M-type, chloroplastic

thioredoxin M4, chloroplastic

thioredoxin M2, chloroplastic

thioredoxin-1-like

thioredoxin-1

thioredoxin-1-like

thioredoxin M-type, chloroplastic-like

uncharacterized LOC102621218

uncharacterized LOC107800160

uncharacterized LOC107825796

uncharacterized LOC107791650

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00195	Photosynthesis	11
sbi00196	Photosynthesis - antenna proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi01200	Carbon metabolism	5
sbi00010	Glycolysis / Gluconeogenesis	4
sbi00710	Carbon fixation by Calvin cycle	4
sbi01230	Biosynthesis of amino acids	4
sbi00190	Oxidative phosphorylation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00196	Photosynthesis - antenna proteins	15
zma00195	Photosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04136	Autophagy - other	4
zma01212	Fatty acid metabolism	2
zma00900	Terpenoid backbone biosynthesis	2
zma01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma01200	Carbon metabolism	3
zma00196	Photosynthesis - antenna proteins	2
zma00710	Carbon fixation by Calvin cycle	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00710	Carbon fixation by Calvin cycle	7
osa01200	Carbon metabolism	7
osa00195	Photosynthesis	6
osa00190	Oxidative phosphorylation	3
osa00030	Pentose phosphate pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	2
osa04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi01200	Carbon metabolism	3
bdi00190	Oxidative phosphorylation	2
bdi00020	Citrate cycle (TCA cycle)	2
bdi01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00710	Carbon fixation by Calvin cycle	6
bdi01200	Carbon metabolism	6
bdi00195	Photosynthesis	4
bdi00010	Glycolysis / Gluconeogenesis	2
bdi00030	Pentose phosphate pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00195	Photosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00195	Photosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	12

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	10

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma01200	Carbon metabolism	3
gma00260	Glycine, serine and threonine metabolism	2
gma00630	Glyoxylate and dicarboxylate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00195	Photosynthesis	3
sly03010	Ribosome	2
sly01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03060	Protein export	3
sly04141	Protein processing in endoplasmic reticulum	3
sly04145	Phagosome	2
sly00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00730	Thiamine metabolism	3
bra01240	Biosynthesis of cofactors	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	7
bra00630	Glyoxylate and dicarboxylate metabolism	4
bra01200	Carbon metabolism	4
bra00260	Glycine, serine and threonine metabolism	3
bra00670	One carbon pool by folate	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi01200	Carbon metabolism	10
vvi00710	Carbon fixation by Calvin cycle	7
vvi00010	Glycolysis / Gluconeogenesis	4
vvi00630	Glyoxylate and dicarboxylate metabolism	4
vvi00030	Pentose phosphate pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00620	Pyruvate metabolism	6
vvi01200	Carbon metabolism	6
vvi00010	Glycolysis / Gluconeogenesis	5
vvi00020	Citrate cycle (TCA cycle)	5
vvi00785	Lipoic acid metabolism	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	7
vvi00195	Photosynthesis	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00195	Photosynthesis	14
ppo00196	Photosynthesis - antenna proteins	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00195	Photosynthesis	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr01200	Carbon metabolism	6
mtr00710	Carbon fixation by Calvin cycle	4
mtr01230	Biosynthesis of amino acids	4
mtr00010	Glycolysis / Gluconeogenesis	3
mtr00630	Glyoxylate and dicarboxylate metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi01200	Carbon metabolism	6
ghi00195	Photosynthesis	5
ghi00710	Carbon fixation by Calvin cycle	5
ghi00630	Glyoxylate and dicarboxylate metabolism	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00195	Photosynthesis	3
ghi00196	Photosynthesis - antenna proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00195	Photosynthesis	4
sot00710	Carbon fixation by Calvin cycle	3
sot01200	Carbon metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	15

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00630	Glyoxylate and dicarboxylate metabolism	3
sot01200	Carbon metabolism	3
sot00710	Carbon fixation by Calvin cycle	2
sot00260	Glycine, serine and threonine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00710	Carbon fixation by Calvin cycle	4
cit01200	Carbon metabolism	4
cit00195	Photosynthesis	2
cit01230	Biosynthesis of amino acids	2
cit00010	Glycolysis / Gluconeogenesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	12

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00190	Oxidative phosphorylation	6
nta00010	Glycolysis / Gluconeogenesis	5
nta00030	Pentose phosphate pathway	3
nta00051	Fructose and mannose metabolism	3
nta01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	8
nta00860	Porphyrin metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	9
nta00260	Glycine, serine and threonine metabolism	2
nta00561	Glycerolipid metabolism	2
nta00630	Glyoxylate and dicarboxylate metabolism	2
nta01200	Carbon metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

8082775

8066203

110431322

542254

100284385

103640889

9270622

4330107

4336484

123147313

123189811

123427326

123411781

123398470

100835992

100844323

820775

825653

839436

100811845

100526924

100500292

101249435

101261858

101268617

103859618

103858694

103843692

100264263

100252295

100245250

18099015

25501232

25489759

25487352

107897113

107910420

107918616

125586980

125586983

106435142

102587966

102588026

102595959

102612554

102621218

107800160

107825796

107791650

The preparation time of this page was 0.2 [sec].


Species	sbi	zma	osa	tae	hvu	bdi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	4	3	3	3	3	2	2	3	3	3	3	2	3	3	3	3	2	3	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 8082775 (sbi-r.1 coexpression data)

Top 50 enrichment test to 8082775 (sbi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**