ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
sbi-r.1	8084385	DEAD-box ATP-dependent RNA helicase 9
sbi-r.1	110436660	DEAD-box ATP-dependent RNA helicase 3, chloroplastic
sbi-r.1	8079918	DEAD-box ATP-dependent RNA helicase 53
zma-u.5	100501766	putative DEAD-box ATP-dependent RNA helicase family protein
zma-u.5	100281387	nucleolar RNA helicase 2
zma-u.5	100193526	RNA helicase3
osa-u.5	4334649	DEAD-box ATP-dependent RNA helicase 3, chloroplastic-like
osa-u.5	4342387	DEAD-box ATP-dependent RNA helicase 53-like
osa-u.5	4352769	DEAD-box ATP-dependent RNA helicase 9-like
tae-r.2	123102215	DEAD-box ATP-dependent RNA helicase 9
tae-r.2	123044995	DEAD-box ATP-dependent RNA helicase 53
tae-r.2	123052877	DEAD-box ATP-dependent RNA helicase 53
hvu-r.1	123453140	DEAD-box ATP-dependent RNA helicase 3, chloroplastic
hvu-r.1	123426284	DEAD-box ATP-dependent RNA helicase 53-like
hvu-r.1	123399972	DEAD-box ATP-dependent RNA helicase 9-like
bdi-r.1	100823441	DEAD-box ATP-dependent RNA helicase 3, chloroplastic
bdi-r.1	100830452	DEAD-box ATP-dependent RNA helicase 53
bdi-r.1	100832999	DEAD-box ATP-dependent RNA helicase 9
ath-u.5	PMH1	putative mitochondrial RNA helicase 1
ath-u.5	PMH2	putative mitochondrial RNA helicase 2
ath-u.5	emb1138	DEAD box RNA helicase (RH3)
gma-u.5	100815635	DEAD-box ATP-dependent RNA helicase 53, mitochondrial
gma-u.5	100779706	DEAD-box ATP-dependent RNA helicase 3, chloroplastic
gma-u.5	100786041	DEAD-box ATP-dependent RNA helicase 53, mitochondrial
sly-u.5	101263737	DEAD-box ATP-dependent RNA helicase 3, chloroplastic
sly-u.5	101259710	DEAD-box ATP-dependent RNA helicase 53, mitochondrial
sly-u.5	101249660	DEAD-box ATP-dependent RNA helicase 53, mitochondrial
bra-r.6	103854713	DEAD-box ATP-dependent RNA helicase 3, chloroplastic
bra-r.6	103869091	DEAD-box ATP-dependent RNA helicase 9, mitochondrial
vvi-u.5	100250610	DEAD-box ATP-dependent RNA helicase 53, mitochondrial
vvi-u.5	100251060	DEAD-box ATP-dependent RNA helicase 3, chloroplastic
ppo-u.5	18098466	DEAD-box ATP-dependent RNA helicase 3, chloroplastic
ppo-u.5	18099727	DEAD-box ATP-dependent RNA helicase 3, chloroplastic
ppo-u.5	7479617	DEAD-box ATP-dependent RNA helicase 53, mitochondrial
mtr-u.5	25490534	DEAD-box ATP-dependent RNA helicase 53, mitochondrial
mtr-u.5	112416391	DEAD-box ATP-dependent RNA helicase 3, chloroplastic
mtr-u.5	11431480	DEAD-box ATP-dependent RNA helicase 53, mitochondrial
ghi-r.1	107959735	DEAD-box ATP-dependent RNA helicase 53, mitochondrial
ghi-r.1	107959632	DEAD-box ATP-dependent RNA helicase 53, mitochondrial
ghi-r.1	107927254	DEAD-box ATP-dependent RNA helicase 3, chloroplastic
bna-r.1	106348726	DEAD-box ATP-dependent RNA helicase 3, chloroplastic
bna-r.1	125600348	DEAD-box ATP-dependent RNA helicase 9, mitochondrial-like
bna-r.1	106453849	DEAD-box ATP-dependent RNA helicase 53, mitochondrial-like
sot-r.1	102580637	DEAD-box ATP-dependent RNA helicase 53-like
sot-r.1	102586405	DEAD-box ATP-dependent RNA helicase 3, chloroplastic
sot-r.1	102599073	DEAD-box ATP-dependent RNA helicase 53-like
cit-r.1	102614348	DEAD-box ATP-dependent RNA helicase 3, chloroplastic
cit-r.1	102629018	DEAD-box ATP-dependent RNA helicase 53, mitochondrial-like
nta-r.1	107785925	DEAD-box ATP-dependent RNA helicase 53, mitochondrial
nta-r.1	107828595	DEAD-box ATP-dependent RNA helicase 3, chloroplastic
nta-r.1	107821343	DEAD-box ATP-dependent RNA helicase 3, chloroplastic
cre-r.1	CHLRE_17g727700v5	uncharacterized protein

Top 50 coexpressed genes to 8084385 (sbi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 8084385 (sbi-r.1 coexpression data)

CoexMap"8084385"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

GO:0005524 [list] [network] ATP binding	(2084 genes)	IEA
GO:0003676 [list] [network] nucleic acid binding	(3505 genes)	IEA

Protein

XP_002443537.1 [sequence] [blastp]

Subcellular
localization
wolf

mito 5, chlo_mito 4, chlo 4, cyto_mito 3

(predict for XP_002443537.1)

Subcellular
localization
TargetP

mito 8

(predict for XP_002443537.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sbi-r.1 for 8084385	sbi-r.1 for 110436660	sbi-r.1 for 8079918	zma-u.5 for 100501766	zma-u.5 for 100281387	zma-u.5 for 100193526	osa-u.5 for 4334649	osa-u.5 for 4342387	osa-u.5 for 4352769	tae-r.2 for 123102215	tae-r.2 for 123044995	tae-r.2 for 123052877	hvu-r.1 for 123453140	hvu-r.1 for 123426284	hvu-r.1 for 123399972	bdi-r.1 for 100823441	bdi-r.1 for 100830452	bdi-r.1 for 100832999	ath-u.5 for PMH1	ath-u.5 for PMH2	ath-u.5 for emb1138	gma-u.5 for 100815635	gma-u.5 for 100779706	gma-u.5 for 100786041	sly-u.5 for 101263737	sly-u.5 for 101259710	sly-u.5 for 101249660	bra-r.6 for 103854713	bra-r.6 for 103869091	vvi-u.5 for 100250610	vvi-u.5 for 100251060	ppo-u.5 for 18098466	ppo-u.5 for 18099727	ppo-u.5 for 7479617	mtr-u.5 for 25490534	mtr-u.5 for 112416391	mtr-u.5 for 11431480	ghi-r.1 for 107959735	ghi-r.1 for 107959632	ghi-r.1 for 107927254	bna-r.1 for 106348726	bna-r.1 for 125600348	bna-r.1 for 106453849	sot-r.1 for 102580637	sot-r.1 for 102586405	sot-r.1 for 102599073	cit-r.1 for 102614348	cit-r.1 for 102629018	nta-r.1 for 107785925	nta-r.1 for 107828595	nta-r.1 for 107821343	cre-r.1 for CHLRE_17g727700v5

Ortholog

Ortholog ID: 1317

Species

sbi

zma

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

PMH1

PMH2

emb1138

Function^*

DEAD-box ATP-dependent RNA helicase 9

DEAD-box ATP-dependent RNA helicase 3, chloroplastic

DEAD-box ATP-dependent RNA helicase 53

putative DEAD-box ATP-dependent RNA helicase family protein

nucleolar RNA helicase 2

DEAD-box ATP-dependent RNA helicase 3, chloroplastic-like

DEAD-box ATP-dependent RNA helicase 53-like

DEAD-box ATP-dependent RNA helicase 9-like

DEAD-box ATP-dependent RNA helicase 9

DEAD-box ATP-dependent RNA helicase 53

DEAD-box ATP-dependent RNA helicase 3, chloroplastic

DEAD-box ATP-dependent RNA helicase 53-like

DEAD-box ATP-dependent RNA helicase 9-like

DEAD-box ATP-dependent RNA helicase 3, chloroplastic

DEAD-box ATP-dependent RNA helicase 53

DEAD-box ATP-dependent RNA helicase 9

putative mitochondrial RNA helicase 1

putative mitochondrial RNA helicase 2

DEAD box RNA helicase (RH3)

DEAD-box ATP-dependent RNA helicase 53, mitochondrial

DEAD-box ATP-dependent RNA helicase 3, chloroplastic

DEAD-box ATP-dependent RNA helicase 53, mitochondrial

DEAD-box ATP-dependent RNA helicase 3, chloroplastic

DEAD-box ATP-dependent RNA helicase 53, mitochondrial

DEAD-box ATP-dependent RNA helicase 3, chloroplastic

DEAD-box ATP-dependent RNA helicase 53, mitochondrial

DEAD-box ATP-dependent RNA helicase 3, chloroplastic

DEAD-box ATP-dependent RNA helicase 53, mitochondrial

DEAD-box ATP-dependent RNA helicase 3, chloroplastic

DEAD-box ATP-dependent RNA helicase 3, chloroplastic-like

DEAD-box ATP-dependent RNA helicase 9, mitochondrial

DEAD-box ATP-dependent RNA helicase 53-like

DEAD-box ATP-dependent RNA helicase 3, chloroplastic

DEAD-box ATP-dependent RNA helicase 53-like

DEAD-box ATP-dependent RNA helicase 3, chloroplastic

DEAD-box ATP-dependent RNA helicase 53, mitochondrial-like

DEAD-box ATP-dependent RNA helicase 3, chloroplastic

DEAD-box ATP-dependent RNA helicase 53, mitochondrial

DEAD-box ATP-dependent RNA helicase 53, mitochondrial-like

uncharacterized protein

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03008	Ribosome biogenesis in eukaryotes	2
zma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	2
osa03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	4
tae03083	Polycomb repressive complex	4
tae04712	Circadian rhythm - plant	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	2
bdi03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03008	Ribosome biogenesis in eukaryotes	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	3
ath03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03008	Ribosome biogenesis in eukaryotes	2
gma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03008	Ribosome biogenesis in eukaryotes	2
gma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	4
sly03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00970	Aminoacyl-tRNA biosynthesis	2
sly03008	Ribosome biogenesis in eukaryotes	2
sly03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03008	Ribosome biogenesis in eukaryotes	5
vvi03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03008	Ribosome biogenesis in eukaryotes	4
ghi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00010	Glycolysis / Gluconeogenesis	2
ghi00710	Carbon fixation by Calvin cycle	2
ghi01200	Carbon metabolism	2
ghi01230	Biosynthesis of amino acids	2
ghi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03018	RNA degradation	2
bna00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	2
cit03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03008	Ribosome biogenesis in eukaryotes	5
cit03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	2
nta03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00260	Glycine, serine and threonine metabolism	2
nta00460	Cyanoamino acid metabolism	2
nta00630	Glyoxylate and dicarboxylate metabolism	2
nta00670	One carbon pool by folate	2
nta01200	Carbon metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

8084385

110436660

8079918

100501766

100281387

4334649

4342387

4352769

123102215

123119407

123188768

123453140

123426284

123399972

100823441

100830452

100832999

821800

821802

832713

100815635

100786041

100789516

101263737

101259710

101249660

103854713

103834627

100250610

100251060

18098466

18099727

7479617

25490534

112416391

11431480

107959735

107959632

107927254

125600788

106348589

106418202

102580637

102586405

102599073

102614348

102629018

107821343

107806489

107793762

5722812

The preparation time of this page was 0.1 [sec].


Species	sbi	zma	osa	tae	hvu	bdi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	3	3	3	3	3	3	3	3	3	2	2	3	3	3	3	3	2	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 8084385 (sbi-r.1 coexpression data)

Top 50 enrichment test to 8084385 (sbi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**