ATTED-II : GeneCoexpression result

Species	Gene	Description
sot-r.1	102589544	THO complex subunit 1
sly-u.5	101245499	THO complex subunit 1
nta-r.1	107832705	THO complex subunit 1
nta-r.1	107828687	THO complex subunit 1
ath-u.5	THO1	nuclear matrix protein-like protein
gma-u.5	100781333	THO complex subunit 1
bra-r.6	103850354	THO complex subunit 1
vvi-u.5	100250474	THO complex subunit 1
vvi-u.5	100262610	THO complex subunit 1
ppo-u.5	7460257	THO complex subunit 1
ppo-u.5	7455804	THO complex subunit 1
mtr-u.5	112420425	THO complex subunit 1
ghi-r.1	107897015	THO complex subunit 1
ghi-r.1	107927603	THO complex subunit 1
bna-r.1	106418721	THO complex subunit 1
bna-r.1	106383003	THO complex subunit 1
cit-r.1	102612813	THO complex subunit 1
osa-u.5	4331353	THO complex subunit 1
zma-u.5	100304252	THO complex subunit 1
tae-r.2	123106180	THO complex subunit 1
tae-r.2	123099218	THO complex subunit 1
tae-r.2	123094024	THO complex subunit 1
hvu-r.1	123450042	THO complex subunit 1
sbi-r.1	8078017	THO complex subunit 1
bdi-r.1	100832078	THO complex subunit 1
cre-r.1	CHLRE_16g695300v5	uncharacterized protein

Annotation

functional annotation

KEGG

sot03013 [list] [network] Nucleocytoplasmic transport (112 genes)

sot03040 [list] [network] Spliceosome (223 genes)

GO BP

GO:0006406 [list] [network] mRNA export from nucleus

(29 genes)

IEA

GO CC

GO:0000445 [list] [network] THO complex part of transcription export complex

(6 genes)

IEA

GO MF

Protein

XP_006347676.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 8, chlo 1, nucl 1, E.R. 1

(predict for XP_006347676.1)

Subcellular
localization
TargetP

other 7

(predict for XP_006347676.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sot-r.1 for 102589544	sly-u.5 for 101245499	nta-r.1 for 107832705	nta-r.1 for 107828687	ath-u.5 for THO1	gma-u.5 for 100781333	bra-r.6 for 103850354	vvi-u.5 for 100250474	vvi-u.5 for 100262610	ppo-u.5 for 7460257	ppo-u.5 for 7455804	mtr-u.5 for 112420425	ghi-r.1 for 107897015	ghi-r.1 for 107927603	bna-r.1 for 106418721	bna-r.1 for 106383003	cit-r.1 for 102612813	osa-u.5 for 4331353	zma-u.5 for 100304252	tae-r.2 for 123106180	tae-r.2 for 123099218	tae-r.2 for 123094024	hvu-r.1 for 123450042	sbi-r.1 for 8078017	bdi-r.1 for 100832078	cre-r.1 for CHLRE_16g695300v5

Ortholog

Ortholog ID: 8588

Species

sot

sly

nta

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

THO1

Function^*

THO complex subunit 1

nuclear matrix protein-like protein

THO complex subunit 1

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03082	ATP-dependent chromatin remodeling	2
sot03022	Basal transcription factors	2
sot03013	Nucleocytoplasmic transport	2
sot03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	4
sly03022	Basal transcription factors	2
sly03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03013	Nucleocytoplasmic transport	4
nta03008	Ribosome biogenesis in eukaryotes	2
nta03040	Spliceosome	2
nta03018	RNA degradation	2
nta04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	7
nta04120	Ubiquitin mediated proteolysis	5
nta03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	5
ath03013	Nucleocytoplasmic transport	5
ath03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03082	ATP-dependent chromatin remodeling	2
bra03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03013	Nucleocytoplasmic transport	2
vvi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03013	Nucleocytoplasmic transport	3
vvi03018	RNA degradation	2
vvi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	3
ppo00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03015	mRNA surveillance pathway	2
ppo00511	Other glycan degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03050	Proteasome	4
mtr03083	Polycomb repressive complex	3
mtr04120	Ubiquitin mediated proteolysis	3
mtr04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	6
ghi03022	Basal transcription factors	3
ghi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	6
ghi03022	Basal transcription factors	3
ghi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	6
bna03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	6
bna03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00563	Glycosylphosphatidylinositol (GPI)-anchor biosynthesis	2
cit03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03015	mRNA surveillance pathway	2
osa03010	Ribosome	2
osa00510	N-Glycan biosynthesis	2
osa04141	Protein processing in endoplasmic reticulum	2
osa03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	5
zma03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	3
tae03060	Protein export	3
tae03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	5
tae03013	Nucleocytoplasmic transport	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03013	Nucleocytoplasmic transport	4
sbi03040	Spliceosome	3
sbi04141	Protein processing in endoplasmic reticulum	2
sbi04122	Sulfur relay system	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00190	Oxidative phosphorylation	4
bdi00195	Photosynthesis	4
bdi03010	Ribosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03015	mRNA surveillance pathway	2
cre03082	ATP-dependent chromatin remodeling	2

Expression

Expression pattern

Entrez Gene ID^*

102589544

101245499

107832705

107828687

830846

100781333

103850354

100250474

100262610

7460257

7455804

112420425

107897015

107927603

106418721

106383003

102612813

4331353

100304252

123099218

123094024

123450042

8078017

100832078

5724875

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 102589544 (sot-r.1 coexpression data)

Top 50 enrichment test to 102589544 (sot-r.1 coexpression data)


Species	sot	sly	nta	ath	gma	bra	vvi	ppo	mtr	ghi	bna	cit	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	1	1	2	1	1	1	2	2	1	2	2	1	1	1	3	1	1	1	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 102589544 (sot-r.1 coexpression data)

Top 50 enrichment test to 102589544 (sot-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**