ATTED-II : GeneCoexpression result

Species	Gene	Description
sot-r.1	102593701	uncharacterized LOC102593701
sly-u.5	101247228	uncharacterized LOC101247228
nta-r.1	107773413	uncharacterized LOC107773413
nta-r.1	107770596	uncharacterized LOC107770596
ath-u.5	AT3G47850	tRNA (Ile)-lysidine synthase
gma-u.5	100794844	uncharacterized LOC100794844
gma-u.5	100777249	uncharacterized LOC100777249
bra-r.6	103873193	uncharacterized LOC103873193
vvi-u.5	100258784	hypothetical protein
ppo-u.5	7483456	B3 domain-containing protein Os02g0598200
mtr-u.5	25480532	uncharacterized LOC25480532
ghi-r.1	107918369	uncharacterized LOC107918369
ghi-r.1	107893576	uncharacterized LOC107893576
bna-r.1	106407406	uncharacterized LOC106407406
bna-r.1	106347592	uncharacterized LOC106347592
cit-r.1	102623830	uncharacterized LOC102623830
osa-u.5	4338129	uncharacterized LOC4338129
zma-u.5	103643837	histone H3.v1
tae-r.2	123095761	histone H3.v1
tae-r.2	123090746	histone H3.v1
tae-r.2	123086334	histone H3.v1
hvu-r.1	123447245	histone H3.v1
sbi-r.1	8062963	histone H3.v1
bdi-r.1	100824252	neurofilament medium polypeptide

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0009507 [list] [network] chloroplast

(606 genes)

IEA

GO MF

Protein

XP_006354806.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 6, mito 1, nucl 1, cyto 1, plas 1, cyto_nucl 1, cyto_mito 1, nucl_plas 1, cyto_plas 1

(predict for XP_006354806.1)

Subcellular
localization
TargetP

mito 7, chlo 6

(predict for XP_006354806.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sot-r.1 for 102593701	sly-u.5 for 101247228	nta-r.1 for 107773413	nta-r.1 for 107770596	ath-u.5 for AT3G47850	gma-u.5 for 100794844	gma-u.5 for 100777249	bra-r.6 for 103873193	vvi-u.5 for 100258784	ppo-u.5 for 7483456	mtr-u.5 for 25480532	ghi-r.1 for 107918369	ghi-r.1 for 107893576	bna-r.1 for 106407406	bna-r.1 for 106347592	cit-r.1 for 102623830	osa-u.5 for 4338129	zma-u.5 for 103643837	tae-r.2 for 123095761	tae-r.2 for 123090746	tae-r.2 for 123086334	hvu-r.1 for 123447245	sbi-r.1 for 8062963	bdi-r.1 for 100824252

Ortholog

Ortholog ID: 9523

Species

sot

sly

nta

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

uncharacterized LOC102593701

uncharacterized LOC101247228

uncharacterized LOC107773413

uncharacterized LOC107770596

tRNA (Ile)-lysidine synthase

uncharacterized LOC100794844

uncharacterized LOC100777249

uncharacterized LOC103873193

hypothetical protein

B3 domain-containing protein Os02g0598200

uncharacterized LOC25480532

uncharacterized LOC107918369

uncharacterized LOC107893576

uncharacterized LOC106407406

uncharacterized LOC106347592

uncharacterized LOC102623830

uncharacterized LOC4338129

histone H3.v1

cyclic nucleotide-gated cation channel beta-1

histone H3.v1

neurofilament medium polypeptide

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	3
sot03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03410	Base excision repair	3
nta03018	RNA degradation	2
nta03040	Spliceosome	2
nta03083	Polycomb repressive complex	2
nta03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03410	Base excision repair	3
nta03018	RNA degradation	2
nta03040	Spliceosome	2
nta03083	Polycomb repressive complex	2
nta03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04144	Endocytosis	4
gma03015	mRNA surveillance pathway	3
gma04136	Autophagy - other	3
gma04382	Cornified envelope formation	3
gma03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04146	Peroxisome	2
gma03250	Viral life cycle - HIV-1	2
gma03272	Virion - Hepatitis viruses	2
gma04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03050	Proteasome	3
bra00190	Oxidative phosphorylation	2
bra04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03050	Proteasome	4
bna03440	Homologous recombination	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03082	ATP-dependent chromatin remodeling	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00190	Oxidative phosphorylation	3
tae03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	3

Expression

Expression pattern

Entrez Gene ID^*

102593701

101247228

107773413

107770596

823941

100794844

100777249

103873193

100258784

7483456

25480532

107918369

107893576

106407406

106347592

102623830

4338129

103643837

123095761

123090746

123070400

123447245

8062963

100824252

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 102593701 (sot-r.1 coexpression data)

Top 50 enrichment test to 102593701 (sot-r.1 coexpression data)


Species	sot	sly	nta	ath	gma	bra	vvi	ppo	mtr	ghi	bna	cit	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	1	1	2	1	2	1	1	1	1	2	2	1	1	1	3	1	1	1	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 102593701 (sot-r.1 coexpression data)

Top 50 enrichment test to 102593701 (sot-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**