ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
sot-r.1	102597499	regulator of nonsense transcripts 1 homolog
sot-r.1	102580894	regulator of nonsense transcripts 1 homolog
sly-u.5	101258879	regulator of nonsense transcripts 1 homolog
sly-u.5	101257199	regulator of nonsense transcripts 1 homolog
nta-r.1	107813559	regulator of nonsense transcripts 1 homolog
nta-r.1	107803906	regulator of nonsense transcripts 1 homolog
nta-r.1	107763141	regulator of nonsense transcripts 1 homolog
ath-u.5	LBA1	RNA helicase
gma-u.5	100795594	regulator of nonsense transcripts 1 homolog
gma-u.5	100793750	regulator of nonsense transcripts 1 homolog
bra-r.6	103853766	regulator of nonsense transcripts 1 homolog
vvi-u.5	100264343	regulator of nonsense transcripts 1 homolog
ppo-u.5	18096919	regulator of nonsense transcripts 1 homolog
ppo-u.5	18094225	regulator of nonsense transcripts 1 homolog
mtr-u.5	11438910	regulator of nonsense transcripts 1 homolog
ghi-r.1	107890625	regulator of nonsense transcripts 1 homolog
ghi-r.1	121215623	regulator of nonsense transcripts 1 homolog
ghi-r.1	107933728	regulator of nonsense transcripts 1 homolog
bna-r.1	106378491	regulator of nonsense transcripts 1 homolog
bna-r.1	106400530	regulator of nonsense transcripts 1 homolog
cit-r.1	102615436	regulator of nonsense transcripts 1 homolog
osa-u.5	4343292	regulator of nonsense transcripts 1 homolog
zma-u.5	100383288	uncharacterized LOC100383288
zma-u.5	100304236	uncharacterized LOC100304236
tae-r.2	123188489	regulator of nonsense transcripts 1 homolog
tae-r.2	123052735	regulator of nonsense transcripts 1 homolog
tae-r.2	123044827	regulator of nonsense transcripts 1 homolog
hvu-r.1	123426134	regulator of nonsense transcripts 1 homolog
sbi-r.1	8077469	regulator of nonsense transcripts 1 homolog
bdi-r.1	100838876	regulator of nonsense transcripts 1 homolog
cre-r.1	CHLRE_02g092500v5	uncharacterized protein

Top 50 coexpressed genes to 102597499 (sot-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 102597499 (sot-r.1 coexpression data)

CoexMap"102597499"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0000184 [list] [network] nuclear-transcribed mRNA catabolic process, nonsense-mediated decay

(16 genes)

IEA

GO CC

GO:0005737 [list] [network] cytoplasm

(4349 genes)

IEA

GO MF

GO:0003724 [list] [network] RNA helicase activity	(63 genes)	IEA
GO:0008270 [list] [network] zinc ion binding	(768 genes)	IEA
GO:0003723 [list] [network] RNA binding	(1335 genes)	IEA
GO:0003677 [list] [network] DNA binding	(1885 genes)	IEA
GO:0005524 [list] [network] ATP binding	(2117 genes)	IEA
GO:0016787 [list] [network] hydrolase activity	(2863 genes)	IEA

Protein

XP_006362492.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9, cyto 1, vacu 1

(predict for XP_006362492.1)

Subcellular
localization
TargetP

other 9

(predict for XP_006362492.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sot-r.1 for 102597499	sot-r.1 for 102580894	sly-u.5 for 101258879	sly-u.5 for 101257199	nta-r.1 for 107813559	nta-r.1 for 107803906	nta-r.1 for 107763141	ath-u.5 for LBA1	gma-u.5 for 100795594	gma-u.5 for 100793750	bra-r.6 for 103853766	vvi-u.5 for 100264343	ppo-u.5 for 18096919	ppo-u.5 for 18094225	mtr-u.5 for 11438910	ghi-r.1 for 107890625	ghi-r.1 for 121215623	ghi-r.1 for 107933728	bna-r.1 for 106378491	bna-r.1 for 106400530	cit-r.1 for 102615436	osa-u.5 for 4343292	zma-u.5 for 100383288	zma-u.5 for 100304236	tae-r.2 for 123188489	tae-r.2 for 123052735	tae-r.2 for 123044827	hvu-r.1 for 123426134	sbi-r.1 for 8077469	bdi-r.1 for 100838876	cre-r.1 for CHLRE_02g092500v5

Ortholog

Ortholog ID: 6099

Species

sot

sly

nta

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

LBA1

Function^*

regulator of nonsense transcripts 1 homolog

RNA helicase

regulator of nonsense transcripts 1 homolog

uncharacterized LOC100383288

uncharacterized LOC100304236

regulator of nonsense transcripts 1 homolog

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04148	Efferocytosis	3
sot03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03020	RNA polymerase	2
nta03420	Nucleotide excision repair	2
nta04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04136	Autophagy - other	2
nta00240	Pyrimidine metabolism	2
nta01232	Nucleotide metabolism	2
nta01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03020	RNA polymerase	2
nta03420	Nucleotide excision repair	2
nta04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03018	RNA degradation	3
ath03040	Spliceosome	2
ath03015	mRNA surveillance pathway	2
ath04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04120	Ubiquitin mediated proteolysis	3
gma04136	Autophagy - other	2
gma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03015	mRNA surveillance pathway	4
bra04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03082	ATP-dependent chromatin remodeling	4
vvi04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03015	mRNA surveillance pathway	2
ppo03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03013	Nucleocytoplasmic transport	4
ghi03015	mRNA surveillance pathway	4
ghi03018	RNA degradation	3
ghi03008	Ribosome biogenesis in eukaryotes	2
ghi03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03013	Nucleocytoplasmic transport	4
ghi03015	mRNA surveillance pathway	4
ghi03018	RNA degradation	3
ghi03008	Ribosome biogenesis in eukaryotes	2
ghi03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03013	Nucleocytoplasmic transport	4
ghi03015	mRNA surveillance pathway	4
ghi03018	RNA degradation	3
ghi03008	Ribosome biogenesis in eukaryotes	2
ghi03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04141	Protein processing in endoplasmic reticulum	8
bna03013	Nucleocytoplasmic transport	2
bna03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04141	Protein processing in endoplasmic reticulum	8
bna03013	Nucleocytoplasmic transport	2
bna03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04120	Ubiquitin mediated proteolysis	3
cit04136	Autophagy - other	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03015	mRNA surveillance pathway	5
zma03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04120	Ubiquitin mediated proteolysis	3
zma03015	mRNA surveillance pathway	3
zma03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03015	mRNA surveillance pathway	6
tae03013	Nucleocytoplasmic transport	3
tae04136	Autophagy - other	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03015	mRNA surveillance pathway	6
tae03013	Nucleocytoplasmic transport	3
tae03018	RNA degradation	3
tae03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03015	mRNA surveillance pathway	6
tae03013	Nucleocytoplasmic transport	3
tae04136	Autophagy - other	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03015	mRNA surveillance pathway	4
sbi03013	Nucleocytoplasmic transport	2
sbi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03015	mRNA surveillance pathway	3
bdi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03013	Nucleocytoplasmic transport	2

Expression

Expression pattern

Entrez Gene ID^*

102597499

102580894

101258879

101257199

107813559

107803906

107799096

834747

100795594

100793750

103853766

100264343

18096919

18094225

11438910

107933728

107919919

107886389

106378491

106400530

102615436

4343292

100383288

100304236

123188489

123052735

123044827

123426134

8077469

100838876

5727501

The preparation time of this page was 0.1 [sec].


Species	sot	sly	nta	ath	gma	bra	vvi	ppo	mtr	ghi	bna	cit	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	2	2	3	1	2	1	1	2	1	3	2	1	1	2	3	1	1	1	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 102597499 (sot-r.1 coexpression data)

Top 50 enrichment test to 102597499 (sot-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**