ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
sot-r.1	102599073	DEAD-box ATP-dependent RNA helicase 53-like
sot-r.1	102580637	DEAD-box ATP-dependent RNA helicase 53-like
sot-r.1	102586405	DEAD-box ATP-dependent RNA helicase 3, chloroplastic
sly-u.5	101259710	DEAD-box ATP-dependent RNA helicase 53, mitochondrial
sly-u.5	101249660	DEAD-box ATP-dependent RNA helicase 53, mitochondrial
sly-u.5	101263737	DEAD-box ATP-dependent RNA helicase 3, chloroplastic
nta-r.1	107793762	DEAD-box ATP-dependent RNA helicase 53, mitochondrial-like
nta-r.1	107785925	DEAD-box ATP-dependent RNA helicase 53, mitochondrial
nta-r.1	107818142	DEAD-box ATP-dependent RNA helicase 53, mitochondrial
ath-u.5	PMH1	putative mitochondrial RNA helicase 1
ath-u.5	PMH2	putative mitochondrial RNA helicase 2
ath-u.5	emb1138	DEAD box RNA helicase (RH3)
gma-u.5	100808574	DEAD-box ATP-dependent RNA helicase 3, chloroplastic
gma-u.5	100778436	DEAD-box ATP-dependent RNA helicase 53, mitochondrial
gma-u.5	100779706	DEAD-box ATP-dependent RNA helicase 3, chloroplastic
bra-r.6	103837129	DEAD-box ATP-dependent RNA helicase 3, chloroplastic
bra-r.6	103869091	DEAD-box ATP-dependent RNA helicase 9, mitochondrial
vvi-u.5	100251060	DEAD-box ATP-dependent RNA helicase 3, chloroplastic
vvi-u.5	100250610	DEAD-box ATP-dependent RNA helicase 53, mitochondrial
ppo-u.5	18099727	DEAD-box ATP-dependent RNA helicase 3, chloroplastic
ppo-u.5	7479617	DEAD-box ATP-dependent RNA helicase 53, mitochondrial
ppo-u.5	18098466	DEAD-box ATP-dependent RNA helicase 3, chloroplastic
mtr-u.5	11431480	DEAD-box ATP-dependent RNA helicase 53, mitochondrial
mtr-u.5	25490534	DEAD-box ATP-dependent RNA helicase 53, mitochondrial
mtr-u.5	112421614	DEAD-box ATP-dependent RNA helicase 3, chloroplastic
ghi-r.1	107959735	DEAD-box ATP-dependent RNA helicase 53, mitochondrial
ghi-r.1	107959632	DEAD-box ATP-dependent RNA helicase 53, mitochondrial
ghi-r.1	107955430	DEAD-box ATP-dependent RNA helicase 3, chloroplastic
bna-r.1	106433616	DEAD-box ATP-dependent RNA helicase 53, mitochondrial-like
bna-r.1	106382538	DEAD-box ATP-dependent RNA helicase 3, chloroplastic
bna-r.1	106365880	DEAD-box ATP-dependent RNA helicase 3, chloroplastic
cit-r.1	102614348	DEAD-box ATP-dependent RNA helicase 3, chloroplastic
cit-r.1	102629018	DEAD-box ATP-dependent RNA helicase 53, mitochondrial-like
osa-u.5	4342387	DEAD-box ATP-dependent RNA helicase 53-like
osa-u.5	4352769	DEAD-box ATP-dependent RNA helicase 9-like
osa-u.5	4334649	DEAD-box ATP-dependent RNA helicase 3, chloroplastic-like
zma-u.5	100501766	putative DEAD-box ATP-dependent RNA helicase family protein
zma-u.5	100193526	RNA helicase3
tae-r.2	123044995	DEAD-box ATP-dependent RNA helicase 53
tae-r.2	123052877	DEAD-box ATP-dependent RNA helicase 53
tae-r.2	123188768	DEAD-box ATP-dependent RNA helicase 53
hvu-r.1	123399972	DEAD-box ATP-dependent RNA helicase 9-like
hvu-r.1	123426284	DEAD-box ATP-dependent RNA helicase 53-like
hvu-r.1	123453140	DEAD-box ATP-dependent RNA helicase 3, chloroplastic
sbi-r.1	110436660	DEAD-box ATP-dependent RNA helicase 3, chloroplastic
sbi-r.1	8079918	DEAD-box ATP-dependent RNA helicase 53
sbi-r.1	8084385	DEAD-box ATP-dependent RNA helicase 9
bdi-r.1	100832999	DEAD-box ATP-dependent RNA helicase 9
bdi-r.1	100823441	DEAD-box ATP-dependent RNA helicase 3, chloroplastic
bdi-r.1	100830452	DEAD-box ATP-dependent RNA helicase 53
cre-r.1	CHLRE_17g727700v5	uncharacterized protein

Top 50 coexpressed genes to 102599073 (sot-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 102599073 (sot-r.1 coexpression data)

CoexMap"102599073"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0005829 [list] [network] cytosol

(756 genes)

IEA

GO MF

GO:0003724 [list] [network] RNA helicase activity	(63 genes)	IEA
GO:0005524 [list] [network] ATP binding	(2117 genes)	IEA
GO:0003676 [list] [network] nucleic acid binding	(3830 genes)	IEA

Protein

XP_006351991.1 [sequence] [blastp]
XP_006351992.1 [sequence] [blastp]
XP_006351993.1 [sequence] [blastp]
XP_006351994.1 [sequence] [blastp]
XP_015166223.1 [sequence] [blastp]
XP_015166224.1 [sequence] [blastp]
XP_015166225.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 8, mito 1	(predict for XP_006351991.1)
chlo 8, mito 1	(predict for XP_006351992.1)
chlo 8, mito 1	(predict for XP_006351993.1)
chlo 8, mito 1	(predict for XP_006351994.1)
plas 4, chlo 2, nucl_plas 2, golg_plas 2, cysk_plas 2, cyto_plas 2	(predict for XP_015166223.1)
chlo 8, mito 1	(predict for XP_015166224.1)
chlo 8, mito 1	(predict for XP_015166225.1)

Subcellular
localization
TargetP

chlo 6, mito 4	(predict for XP_006351991.1)
chlo 6, mito 4	(predict for XP_006351992.1)
chlo 6, mito 4	(predict for XP_006351993.1)
chlo 6, mito 4	(predict for XP_006351994.1)
chlo 6, mito 4	(predict for XP_015166223.1)
chlo 6, mito 4	(predict for XP_015166224.1)
chlo 6, mito 4	(predict for XP_015166225.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sot-r.1 for 102599073	sot-r.1 for 102580637	sot-r.1 for 102586405	sly-u.5 for 101259710	sly-u.5 for 101249660	sly-u.5 for 101263737	nta-r.1 for 107793762	nta-r.1 for 107785925	nta-r.1 for 107818142	ath-u.5 for PMH1	ath-u.5 for PMH2	ath-u.5 for emb1138	gma-u.5 for 100808574	gma-u.5 for 100778436	gma-u.5 for 100779706	bra-r.6 for 103837129	bra-r.6 for 103869091	vvi-u.5 for 100251060	vvi-u.5 for 100250610	ppo-u.5 for 18099727	ppo-u.5 for 7479617	ppo-u.5 for 18098466	mtr-u.5 for 11431480	mtr-u.5 for 25490534	mtr-u.5 for 112421614	ghi-r.1 for 107959735	ghi-r.1 for 107959632	ghi-r.1 for 107955430	bna-r.1 for 106433616	bna-r.1 for 106382538	bna-r.1 for 106365880	cit-r.1 for 102614348	cit-r.1 for 102629018	osa-u.5 for 4342387	osa-u.5 for 4352769	osa-u.5 for 4334649	zma-u.5 for 100501766	zma-u.5 for 100193526	tae-r.2 for 123044995	tae-r.2 for 123052877	tae-r.2 for 123188768	hvu-r.1 for 123399972	hvu-r.1 for 123426284	hvu-r.1 for 123453140	sbi-r.1 for 110436660	sbi-r.1 for 8079918	sbi-r.1 for 8084385	bdi-r.1 for 100832999	bdi-r.1 for 100823441	bdi-r.1 for 100830452	cre-r.1 for CHLRE_17g727700v5

Ortholog

Ortholog ID: 1317

Species

sot

sly

nta

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

PMH1

PMH2

emb1138

Function^*

DEAD-box ATP-dependent RNA helicase 53-like

DEAD-box ATP-dependent RNA helicase 3, chloroplastic

DEAD-box ATP-dependent RNA helicase 53, mitochondrial

DEAD-box ATP-dependent RNA helicase 3, chloroplastic

DEAD-box ATP-dependent RNA helicase 53, mitochondrial-like

DEAD-box ATP-dependent RNA helicase 3, chloroplastic

DEAD-box ATP-dependent RNA helicase 53, mitochondrial

putative mitochondrial RNA helicase 1

putative mitochondrial RNA helicase 2

DEAD box RNA helicase (RH3)

DEAD-box ATP-dependent RNA helicase 53, mitochondrial

DEAD-box ATP-dependent RNA helicase 3, chloroplastic

DEAD-box ATP-dependent RNA helicase 53, mitochondrial

DEAD-box ATP-dependent RNA helicase 3, chloroplastic

DEAD-box ATP-dependent RNA helicase 53, mitochondrial

DEAD-box ATP-dependent RNA helicase 3, chloroplastic

DEAD-box ATP-dependent RNA helicase 53, mitochondrial

DEAD-box ATP-dependent RNA helicase 3, chloroplastic

DEAD-box ATP-dependent RNA helicase 53, mitochondrial

DEAD-box ATP-dependent RNA helicase 3, chloroplastic

DEAD-box ATP-dependent RNA helicase 53, mitochondrial

DEAD-box ATP-dependent RNA helicase 3, chloroplastic

DEAD-box ATP-dependent RNA helicase 53, mitochondrial

DEAD-box ATP-dependent RNA helicase 3, chloroplastic

DEAD-box ATP-dependent RNA helicase 3, chloroplastic-like

DEAD-box ATP-dependent RNA helicase 9, mitochondrial

DEAD-box ATP-dependent RNA helicase 3, chloroplastic-like

DEAD-box ATP-dependent RNA helicase 3, chloroplastic

DEAD-box ATP-dependent RNA helicase 53, mitochondrial-like

DEAD-box ATP-dependent RNA helicase 53-like

DEAD-box ATP-dependent RNA helicase 9-like

DEAD-box ATP-dependent RNA helicase 3, chloroplastic-like

putative DEAD-box ATP-dependent RNA helicase family protein

nucleolar RNA helicase 2

DEAD-box ATP-dependent RNA helicase 53

DEAD-box ATP-dependent RNA helicase 9

DEAD-box ATP-dependent RNA helicase 9-like

DEAD-box ATP-dependent RNA helicase 53-like

DEAD-box ATP-dependent RNA helicase 3, chloroplastic

DEAD-box ATP-dependent RNA helicase 53

DEAD-box ATP-dependent RNA helicase 9

DEAD-box ATP-dependent RNA helicase 3, chloroplastic

DEAD-box ATP-dependent RNA helicase 53

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	4
sly03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00970	Aminoacyl-tRNA biosynthesis	2
sly03008	Ribosome biogenesis in eukaryotes	2
sly03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00260	Glycine, serine and threonine metabolism	2
nta00460	Cyanoamino acid metabolism	2
nta00630	Glyoxylate and dicarboxylate metabolism	2
nta00670	One carbon pool by folate	2
nta01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	2
nta03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03008	Ribosome biogenesis in eukaryotes	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	3
ath03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03008	Ribosome biogenesis in eukaryotes	2
gma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03008	Ribosome biogenesis in eukaryotes	2
gma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03008	Ribosome biogenesis in eukaryotes	5
vvi03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03008	Ribosome biogenesis in eukaryotes	4
ghi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00010	Glycolysis / Gluconeogenesis	2
ghi00710	Carbon fixation by Calvin cycle	2
ghi01200	Carbon metabolism	2
ghi01230	Biosynthesis of amino acids	2
ghi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03018	RNA degradation	2
bna00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	2
cit03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03008	Ribosome biogenesis in eukaryotes	5
cit03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	2
osa03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03008	Ribosome biogenesis in eukaryotes	2
zma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	4
tae03083	Polycomb repressive complex	4
tae04712	Circadian rhythm - plant	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	2
bdi03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03018	RNA degradation	2

Expression

Expression pattern

Entrez Gene ID^*

102599073

102580637

102586405

101259710

101249660

101263737

107793762

107821343

107806489

821800

821802

832713

100786041

100789516

100815635

103854713

103834627

100251060

100250610

18099727

7479617

18098466

11431480

25490534

112416391

107959735

107959632

107927254

106348589

106418202

125600788

102614348

102629018

4342387

4352769

4334649

100501766

100281387

123188768

123102215

123119407

123399972

123426284

123453140

110436660

8079918

8084385

100832999

100823441

100830452

5722812

The preparation time of this page was 0.1 [sec].


Species	sot	sly	nta	ath	gma	bra	vvi	ppo	mtr	ghi	bna	cit	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	3	3	3	3	3	2	2	3	3	3	3	2	3	2	3	3	3	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 102599073 (sot-r.1 coexpression data)

Top 50 enrichment test to 102599073 (sot-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**