ATTED-II : GeneCoexpression result

Species	Gene	Description
sot-r.1	102599673	50S ribosomal protein L29, chloroplastic-like
sot-r.1	102591222	50S ribosomal protein L29, chloroplastic-like
sly-u.5	101268403	large ribosomal subunit protein uL29c
sly-u.5	101244648	large ribosomal subunit protein uL29c-like
nta-r.1	107799422	large ribosomal subunit protein uL29c-like
nta-r.1	107794717	large ribosomal subunit protein uL29c
nta-r.1	107790523	large ribosomal subunit protein uL29c
ath-u.5	AT5G65220	Ribosomal L29 family protein
gma-u.5	100527233	putative 50S ribosomal protein L29, chloroplastic
gma-u.5	100305741	uncharacterized LOC100305741
bra-r.6	103873951	50S ribosomal protein L29, chloroplastic
bra-r.6	103855288	50S ribosomal protein L29, chloroplastic
vvi-u.5	104877824	50S ribosomal protein L29, chloroplastic
ppo-u.5	7490208	50S ribosomal protein L29, chloroplastic
mtr-u.5	25501907	50S ribosomal protein L29, chloroplastic
ghi-r.1	107913446	50S ribosomal protein L29, chloroplastic
ghi-r.1	107897386	50S ribosomal protein L29, chloroplastic
bna-r.1	125594346	50S ribosomal protein L29, chloroplastic-like
bna-r.1	106426926	50S ribosomal protein L29, chloroplastic-like
bna-r.1	106382881	50S ribosomal protein L29, chloroplastic
cit-r.1	102622482	50S ribosomal protein L29, chloroplastic
osa-u.5	4330763	large ribosomal subunit protein uL29c
zma-u.5	541790	50S ribosomal protein L29, chloroplastic
zma-u.5	100284301	50S ribosomal protein L29
zma-u.5	109941689	50S ribosomal protein L29, chloroplastic
tae-r.2	123128471	50S ribosomal protein L29, chloroplastic
tae-r.2	123138354	50S ribosomal protein L29, chloroplastic
tae-r.2	123145595	50S ribosomal protein L29, chloroplastic
hvu-r.1	123404037	50S ribosomal protein L29, chloroplastic
sbi-r.1	8075691	50S ribosomal protein L29, chloroplastic
bdi-r.1	100822960	50S ribosomal protein L29, chloroplastic

Annotation

functional annotation

KEGG

sot03010 [list] [network] Ribosome (406 genes)

GO BP

GO:0006412 [list] [network] translation

(522 genes)

IEA

GO CC

GO:0005840 [list] [network] ribosome	(378 genes)	IEA
GO:0009507 [list] [network] chloroplast	(606 genes)	IEA

GO MF

GO:0003735 [list] [network] structural constituent of ribosome

(377 genes)

IEA

Protein

XP_006363985.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 6, chlo_mito 5, mito 3

(predict for XP_006363985.1)

Subcellular
localization
TargetP

chlo 8

(predict for XP_006363985.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sot-r.1 for 102599673	sot-r.1 for 102591222	sly-u.5 for 101268403	sly-u.5 for 101244648	nta-r.1 for 107799422	nta-r.1 for 107794717	nta-r.1 for 107790523	ath-u.5 for AT5G65220	gma-u.5 for 100527233	gma-u.5 for 100305741	bra-r.6 for 103873951	bra-r.6 for 103855288	vvi-u.5 for 104877824	ppo-u.5 for 7490208	mtr-u.5 for 25501907	ghi-r.1 for 107913446	ghi-r.1 for 107897386	bna-r.1 for 125594346	bna-r.1 for 106426926	bna-r.1 for 106382881	cit-r.1 for 102622482	osa-u.5 for 4330763	zma-u.5 for 541790	zma-u.5 for 100284301	zma-u.5 for 109941689	tae-r.2 for 123128471	tae-r.2 for 123138354	tae-r.2 for 123145595	hvu-r.1 for 123404037	sbi-r.1 for 8075691	bdi-r.1 for 100822960

Ortholog

Ortholog ID: 5875

Species

sot

sly

nta

ath

gma

bra

vvi

ppo

mtr

ghi

bna

cit

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

50S ribosomal protein L29, chloroplastic-like

large ribosomal subunit protein uL29c

large ribosomal subunit protein uL29c-like

large ribosomal subunit protein uL29c

large ribosomal subunit protein uL29c-like

Ribosomal L29 family protein

putative 50S ribosomal protein L29, chloroplastic

uncharacterized LOC100305741

50S ribosomal protein L29, chloroplastic

50S ribosomal protein L29, chloroplastic-like

50S ribosomal protein L29, chloroplastic

large ribosomal subunit protein uL29c

50S ribosomal protein L29, chloroplastic

50S ribosomal protein L29

50S ribosomal protein L29, chloroplastic

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	16

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	13

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	12

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	16

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	10

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	10
nta00195	Photosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03010	Ribosome	14

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	18

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	19

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	19

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	20

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	13

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	13
ppo00860	Porphyrin metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	13

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	10
ghi00190	Oxidative phosphorylation	2
ghi00195	Photosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	8
ghi00190	Oxidative phosphorylation	2
ghi00195	Photosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03010	Ribosome	11

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03010	Ribosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03010	Ribosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	10

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03010	Ribosome	16

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	16

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	15

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	12

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	10

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03010	Ribosome	13

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03010	Ribosome	15

Expression

Expression pattern

Entrez Gene ID^*

102599673

102591222

101268403

101244648

107799422

107794717

107805721

836647

100527233

100305741

103873951

103855288

104877824

7490208

25501907

107913446

107897386

106426926

106382881

125605823

102622482

4330763

541790

100284301

109941689

123128471

123138354

123145595

123404037

8075691

100822960

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 102599673 (sot-r.1 coexpression data)

Top 50 enrichment test to 102599673 (sot-r.1 coexpression data)


Species	sot	sly	nta	ath	gma	bra	vvi	ppo	mtr	ghi	bna	cit	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	2	2	3	1	2	2	1	1	1	2	3	1	1	3	3	1	1	1	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 102599673 (sot-r.1 coexpression data)

Top 50 enrichment test to 102599673 (sot-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**