ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ghi-r.1	107900716	uncharacterized LOC107900716
ghi-r.1	107950108	uncharacterized LOC107950108
ghi-r.1	121223615	uncharacterized LOC121223615
ghi-r.1	107895020	uncharacterized LOC107895020
ath-u.5	AT1G19010	uncharacterized protein
ath-u.5	AT1G74860	uncharacterized protein
bra-r.6	103835871	uncharacterized LOC103835871
bra-r.6	103831945	uncharacterized LOC103831945
bra-r.6	103875153	uncharacterized LOC103875153
bna-r.1	106431815	uncharacterized LOC106431815
bna-r.1	106431821	uncharacterized LOC106431821
bna-r.1	106354540	uncharacterized LOC106354540
cit-r.1	102619102	uncharacterized LOC102619102
cit-r.1	102611007	uncharacterized LOC102611007
gma-u.5	102665456	uncharacterized LOC102665456
gma-u.5	100809847	uncharacterized LOC100809847
gma-u.5	100797926	uncharacterized LOC100797926
vvi-u.5	100246721	uncharacterized LOC100246721
vvi-u.5	100853631	uncharacterized LOC100853631
ppo-u.5	18108787	uncharacterized LOC18108787
ppo-u.5	7487849	uncharacterized LOC7487849
mtr-u.5	25493779	uncharacterized LOC25493779
sly-u.5	101261905	uncharacterized LOC101261905
sly-u.5	101260735	uncharacterized LOC101260735
sot-r.1	102596124	uncharacterized LOC102596124
sot-r.1	102603481	uncharacterized LOC102603481
nta-r.1	107830221	uncharacterized LOC107830221
nta-r.1	107789962	uncharacterized LOC107789962
nta-r.1	107791410	uncharacterized LOC107791410
osa-u.5	4329779	uncharacterized LOC4329779
zma-u.5	100383781	uncharacterized LOC100383781
zma-u.5	103653685	uncharacterized LOC103653685
tae-r.2	123144576	uncharacterized LOC123144576
tae-r.2	123137175	uncharacterized LOC123137175
tae-r.2	123127469	uncharacterized LOC123127469
hvu-r.1	123403772	uncharacterized LOC123403772
sbi-r.1	8055407	uncharacterized LOC8055407
bdi-r.1	100841453	uncharacterized LOC100841453

Top 50 coexpressed genes to 107900716 (ghi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 107900716 (ghi-r.1 coexpression data)

CoexMap""

[Cytoscape]

Annotation

functional annotation

Function

uncharacterized LOC107900716

KEGG

GO BP

GO CC

GO MF

Protein

XP_040954337.1 [sequence] [blastp]
XP_040954338.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 8, nucl 1	(predict for XP_040954337.1)
chlo 8, nucl 1	(predict for XP_040954338.1)

Subcellular
localization
TargetP

chlo 3	(predict for XP_040954337.1)
chlo 3	(predict for XP_040954338.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ghi-r.1 for 107900716	ghi-r.1 for 107950108	ghi-r.1 for 121223615	ghi-r.1 for 107895020	ath-u.5 for AT1G19010	ath-u.5 for AT1G74860	bra-r.6 for 103835871	bra-r.6 for 103831945	bra-r.6 for 103875153	bna-r.1 for 106431815	bna-r.1 for 106431821	bna-r.1 for 106354540	cit-r.1 for 102619102	cit-r.1 for 102611007	gma-u.5 for 102665456	gma-u.5 for 100809847	gma-u.5 for 100797926	vvi-u.5 for 100246721	vvi-u.5 for 100853631	ppo-u.5 for 18108787	ppo-u.5 for 7487849	mtr-u.5 for 25493779	sly-u.5 for 101261905	sly-u.5 for 101260735	sot-r.1 for 102596124	sot-r.1 for 102603481	nta-r.1 for 107830221	nta-r.1 for 107789962	nta-r.1 for 107791410	osa-u.5 for 4329779	zma-u.5 for 100383781	zma-u.5 for 103653685	tae-r.2 for 123144576	tae-r.2 for 123137175	tae-r.2 for 123127469	hvu-r.1 for 123403772	sbi-r.1 for 8055407	bdi-r.1 for 100841453

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Ortholog

Ortholog ID: 3636

Species

ghi

ath

bra

bna

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

uncharacterized LOC107900716

uncharacterized LOC107950108

uncharacterized LOC107892322

uncharacterized protein

uncharacterized LOC103835871

uncharacterized LOC103831945

uncharacterized LOC103875153

uncharacterized LOC106431815

uncharacterized LOC106431821

uncharacterized BNAC07G25060D

uncharacterized LOC102619102

uncharacterized LOC102611007

uncharacterized LOC102665456

uncharacterized LOC100809847

uncharacterized LOC100797926

uncharacterized LOC100246721

uncharacterized LOC100853631

uncharacterized LOC18108787

uncharacterized LOC7487849

uncharacterized LOC25493779

uncharacterized LOC101261905

uncharacterized LOC101260735

uncharacterized LOC102596124

uncharacterized LOC102603481

uncharacterized LOC107789962

uncharacterized LOC107791410

uncharacterized LOC107823124

uncharacterized LOC4329779

uncharacterized LOC100383781

uncharacterized LOC103653685

uncharacterized LOC123144576

uncharacterized LOC123137175

uncharacterized LOC123127469

uncharacterized LOC123403772

uncharacterized LOC8055407

uncharacterized LOC100841453

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03050	Proteasome	4
ghi04075	Plant hormone signal transduction	2
ghi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04814	Motor proteins	2
ghi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03013	Nucleocytoplasmic transport	2
bna03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03013	Nucleocytoplasmic transport	2
bna03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03050	Proteasome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04130	SNARE interactions in vesicular transport	2
cit03420	Nucleotide excision repair	2
cit04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00010	Glycolysis / Gluconeogenesis	4
gma01200	Carbon metabolism	3
gma01230	Biosynthesis of amino acids	3
gma04075	Plant hormone signal transduction	2
gma04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00562	Inositol phosphate metabolism	2
vvi04070	Phosphatidylinositol signaling system	2
vvi00541	Biosynthesis of various nucleotide sugars	2
vvi01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03050	Proteasome	2
ppo04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03008	Ribosome biogenesis in eukaryotes	3
mtr04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00220	Arginine biosynthesis	2
sly00250	Alanine, aspartate and glutamate metabolism	2
sly00710	Carbon fixation by Calvin cycle	2
sly01200	Carbon metabolism	2
sly01210	2-Oxocarboxylic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00500	Starch and sucrose metabolism	8
sot00520	Amino sugar and nucleotide sugar metabolism	2
sot01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03008	Ribosome biogenesis in eukaryotes	3
sot03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04075	Plant hormone signal transduction	6
nta04626	Plant-pathogen interaction	4
nta03082	ATP-dependent chromatin remodeling	3
nta04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00780	Biotin metabolism	4
nta01240	Biosynthesis of cofactors	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	2
zma03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04016	MAPK signaling pathway - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	2

Expression

Expression pattern

Entrez Gene ID^*

107900716

107950108

107892322

838482

843825

103835871

103831945

103875153

106431815

106431821

106436942

102619102

102611007

102665456

100809847

100797926

100246721

100853631

18108787

7487849

25493779

101261905

101260735

102596124

102603481

107789962

107791410

107823124

4329779

100383781

103653685

123144576

123137175

123127469

123403772

8055407

100841453

The preparation time of this page was 0.1 [sec].


Species	ghi	ath	bra	bna	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	2	3	3	2	3	2	2	1	2	2	3	1	2	3	1	1	1	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 107900716 (ghi-r.1 coexpression data)

Top 50 enrichment test to 107900716 (ghi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**