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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107906286   pentatricopeptide repeat-containing protein At2g30100, chloroplastic 
 ghi-r.1   107958538   pentatricopeptide repeat-containing protein At2g30100, chloroplastic 
 ath-u.5   AT2G30100   pentatricopeptide (PPR) repeat-containing protein 
 bra-r.6   103865007   pentatricopeptide repeat-containing protein At2g30100, chloroplastic 
 bna-r.1   106434873   pentatricopeptide repeat-containing protein At2g30100, chloroplastic 
 bna-r.1   125608060   pentatricopeptide repeat-containing protein At2g30100, chloroplastic-like 
 cit-r.1   102607491   pentatricopeptide repeat-containing protein At2g30100, chloroplastic 
 gma-u.5   100804151   pentatricopeptide repeat-containing protein At2g30100, chloroplastic 
 gma-u.5   100792633   pentatricopeptide repeat-containing protein At2g30100, chloroplastic 
 vvi-u.5   100251804   pentatricopeptide repeat-containing protein At2g30100, chloroplastic 
 ppo-u.5   7454844   pentatricopeptide repeat-containing protein At2g30100, chloroplastic 
 mtr-u.5   25490971   pentatricopeptide repeat-containing protein At2g30100, chloroplastic 
 sly-u.5   101264720   pentatricopeptide repeat-containing protein At2g30100, chloroplastic 
 sot-r.1   102591557   pentatricopeptide repeat-containing protein At2g30100, chloroplastic 
 nta-r.1   107790646   pentatricopeptide repeat-containing protein At2g30100, chloroplastic 
 nta-r.1   107814149   pentatricopeptide repeat-containing protein At2g30100, chloroplastic 
 osa-u.5   4338507   pentatricopeptide repeat-containing protein At2g30100, chloroplastic 
 zma-u.5   100501779   Pentatricopeptide repeat-containing protein chloroplastic 
 tae-r.2   123128963   pentatricopeptide repeat-containing protein At2g30100, chloroplastic 
 tae-r.2   123159077   pentatricopeptide repeat-containing protein At2g30100, chloroplastic 
 tae-r.2   123052646   pentatricopeptide repeat-containing protein At2g30100, chloroplastic 
 hvu-r.1   123441182   pentatricopeptide repeat-containing protein At2g30100, chloroplastic 
 sbi-r.1   8083744   pentatricopeptide repeat-containing protein At2g30100, chloroplastic 
 bdi-r.1   100844465   pentatricopeptide repeat-containing protein At2g30100, chloroplastic 

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Top 50 coexpressed genes to 107906286 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107906286 (ghi-r.1 coexpression data)

CoexMap"107906286"


ghiLOC107906286 | Entrez gene ID : 107906286    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 2 1 1 2 1 2 1 1 1 1 1 2 1 1 3 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0005515 [list] [network] protein binding  (10797 genes)  IEA  
Protein XP_016688732.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9,  chlo_mito 5  (predict for XP_016688732.1)
Subcellular
localization
TargetP
mito 6  (predict for XP_016688732.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107906286
ghi-r.1
for
107958538
ath-u.5
for
AT2G30100
bra-r.6
for
103865007
bna-r.1
for
106434873
bna-r.1
for
125608060
cit-r.1
for
102607491
gma-u.5
for
100804151
gma-u.5
for
100792633
vvi-u.5
for
100251804
ppo-u.5
for
7454844
mtr-u.5
for
25490971
sly-u.5
for
101264720
sot-r.1
for
102591557
nta-r.1
for
107790646
nta-r.1
for
107814149
osa-u.5
for
4338507
zma-u.5
for
100501779
tae-r.2
for
123128963
tae-r.2
for
123159077
tae-r.2
for
123052646
hvu-r.1
for
123441182
sbi-r.1
for
8083744
bdi-r.1
for
100844465


Ortholog ID: 10683
Species ghi ghi ath bra bna bna cit gma gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi
Symbol LOC107906286 LOC107958538 AT2G30100 LOC103865007 LOC106434873 LOC125608060 LOC102607491 LOC100804151 LOC100792633 LOC100251804 LOC7454844 LOC25490971 LOC101264720 LOC102591557 LOC107790646 LOC107814149 LOC4338507 LOC100501779 LOC123128963 LOC123159077 LOC123052646 LOC123441182 LOC8083744 LOC100844465
Function* pentatricopeptide repeat-containing protein At2g30100, chloroplastic pentatricopeptide repeat-containing protein At2g30100, chloroplastic pentatricopeptide (PPR) repeat-containing protein pentatricopeptide repeat-containing protein At2g30100, chloroplastic pentatricopeptide repeat-containing protein At2g30100, chloroplastic pentatricopeptide repeat-containing protein At2g30100, chloroplastic-like pentatricopeptide repeat-containing protein At2g30100, chloroplastic pentatricopeptide repeat-containing protein At2g30100, chloroplastic pentatricopeptide repeat-containing protein At2g30100, chloroplastic pentatricopeptide repeat-containing protein At2g30100, chloroplastic pentatricopeptide repeat-containing protein At2g30100, chloroplastic pentatricopeptide repeat-containing protein At2g30100, chloroplastic pentatricopeptide repeat-containing protein At2g30100, chloroplastic pentatricopeptide repeat-containing protein At2g30100, chloroplastic pentatricopeptide repeat-containing protein At2g30100, chloroplastic pentatricopeptide repeat-containing protein At2g30100, chloroplastic pentatricopeptide repeat-containing protein At2g30100, chloroplastic Pentatricopeptide repeat-containing protein chloroplastic pentatricopeptide repeat-containing protein At2g30100, chloroplastic pentatricopeptide repeat-containing protein At2g30100, chloroplastic pentatricopeptide repeat-containing protein At2g30100, chloroplastic pentatricopeptide repeat-containing protein At2g30100, chloroplastic pentatricopeptide repeat-containing protein At2g30100, chloroplastic pentatricopeptide repeat-containing protein At2g30100, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03420 Nucleotide excision repair 2
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04712 Circadian rhythm - plant 2
bna00010 Glycolysis / Gluconeogenesis 2
bna00620 Pyruvate metabolism 2
bna00630 Glyoxylate and dicarboxylate metabolism 2
bna00650 Butanoate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00010 Glycolysis / Gluconeogenesis 2
bna00620 Pyruvate metabolism 2
bna00630 Glyoxylate and dicarboxylate metabolism 2
bna00650 Butanoate metabolism 2
bna01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04075 Plant hormone signal transduction 5
cit04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00061 Fatty acid biosynthesis 2
mtr00620 Pyruvate metabolism 2
mtr00640 Propanoate metabolism 2
mtr01212 Fatty acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 5
nta03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00906 Carotenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03015 mRNA surveillance pathway 2
zma04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00020 Citrate cycle (TCA cycle) 3
tae00270 Cysteine and methionine metabolism 3
tae00566 Sulfoquinovose metabolism 3
tae00620 Pyruvate metabolism 3
tae00630 Glyoxylate and dicarboxylate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00020 Citrate cycle (TCA cycle) 3
tae00270 Cysteine and methionine metabolism 3
tae00566 Sulfoquinovose metabolism 3
tae00620 Pyruvate metabolism 3
tae00630 Glyoxylate and dicarboxylate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00710 Carbon fixation by Calvin cycle 7
tae01200 Carbon metabolism 7
tae00630 Glyoxylate and dicarboxylate metabolism 6
tae00020 Citrate cycle (TCA cycle) 3
tae00270 Cysteine and methionine metabolism 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107906286 107958538 817561 103865007 106434873 125608060 102607491 100804151 100792633 100251804 7454844 25490971 101264720 102591557 107790646 107814149 4338507 100501779 123128963 123159077 123052646 123441182 8083744 100844465
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