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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107906366   RNA pseudouridine synthase 3, mitochondrial 
 ghi-r.1   107958486   RNA pseudouridine synthase 3, mitochondrial 
 ghi-r.1   107928960   RNA pseudouridine synthase 4, mitochondrial 
 ghi-r.1   107934157   RNA pseudouridine synthase 4, mitochondrial 
 ath-u.5   AT3G19440   Pseudouridine synthase family protein 
 ath-u.5   AT1G78910   Pseudouridine synthase family protein 
 bra-r.6   103869454   RNA pseudouridine synthase 4, mitochondrial 
 bra-r.6   103832368   RNA pseudouridine synthase 3, mitochondrial 
 bna-r.1   106354662   RNA pseudouridine synthase 3, mitochondrial 
 bna-r.1   125589185   RNA pseudouridine synthase 3, mitochondrial-like 
 bna-r.1   106346640   RNA pseudouridine synthase 4, mitochondrial 
 cit-r.1   102631191   RNA pseudouridine synthase 4, mitochondrial 
 cit-r.1   102613704   RNA pseudouridine synthase 3, mitochondrial 
 gma-u.5   100779473   RNA pseudouridine synthase 4, mitochondrial 
 gma-u.5   100817786   RNA pseudouridine synthase 3, mitochondrial 
 vvi-u.5   100253686   RNA pseudouridine synthase 4, mitochondrial 
 vvi-u.5   100259844   RNA pseudouridine synthase 3, mitochondrial 
 ppo-u.5   7457559   RNA pseudouridine synthase 4, mitochondrial 
 ppo-u.5   18098356   RNA pseudouridine synthase 3, mitochondrial 
 mtr-u.5   25497848   RNA pseudouridine synthase 3, mitochondrial 
 mtr-u.5   25494475   RNA pseudouridine synthase 4, mitochondrial 
 sly-u.5   101250345   RNA pseudouridine synthase 4, mitochondrial 
 sly-u.5   101264032   RNA pseudouridine synthase 3, mitochondrial 
 sot-r.1   102602144   RNA pseudouridine synthase 4, mitochondrial 
 sot-r.1   102580767   RNA pseudouridine synthase 3, mitochondrial 
 nta-r.1   107760343   RNA pseudouridine synthase 3, mitochondrial 
 nta-r.1   107796320   RNA pseudouridine synthase 4, mitochondrial-like 
 nta-r.1   107785285   RNA pseudouridine synthase 3, mitochondrial-like 
 osa-u.5   4346373   RNA pseudouridine synthase 4, mitochondrial-like 
 osa-u.5   4346062   RNA pseudouridine synthase 3, mitochondrial-like 
 zma-u.5   100381582   RNA pseudouridine synthase 3 mitochondrial 
 zma-u.5   100285271   RNA pseudouridine synthase 4 mitochondrial 
 tae-r.2   123159688   RNA pseudouridine synthase 3, mitochondrial 
 tae-r.2   123167500   RNA pseudouridine synthase 3, mitochondrial 
 tae-r.2   123151453   RNA pseudouridine synthase 3, mitochondrial 
 hvu-r.1   123411625   RNA pseudouridine synthase 3, mitochondrial 
 hvu-r.1   123399115   RNA pseudouridine synthase 4, mitochondrial 
 sbi-r.1   8062586   RNA pseudouridine synthase 4, mitochondrial 
 sbi-r.1   8063999   RNA pseudouridine synthase 3, mitochondrial 
 bdi-r.1   100821438   RNA pseudouridine synthase 4, mitochondrial 
 bdi-r.1   100846929   RNA pseudouridine synthase 3, mitochondrial 
 cre-r.1   CHLRE_10g428400v5   uncharacterized protein 

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Top 50 coexpressed genes to 107906366 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107906366 (ghi-r.1 coexpression data)

CoexMap"107906366"


ghiLOC107906366 | Entrez gene ID : 107906366    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 2 2 3 2 2 2 2 2 2 2 3 2 2 3 2 2 2 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000455 [list] [network] enzyme-directed rRNA pseudouridine synthesis  (11 genes)  IEA  
GO CC
GO MF
GO:0009982 [list] [network] pseudouridine synthase activity  (37 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (3053 genes)  IEA  
Protein XP_040949544.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  mito 3,  nucl 2,  cyto 1,  cysk 1  (predict for XP_040949544.1)
Subcellular
localization
TargetP
mito 6  (predict for XP_040949544.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107906366
ghi-r.1
for
107958486
ghi-r.1
for
107928960
ghi-r.1
for
107934157
ath-u.5
for
AT3G19440
ath-u.5
for
AT1G78910
bra-r.6
for
103869454
bra-r.6
for
103832368
bna-r.1
for
106354662
bna-r.1
for
125589185
bna-r.1
for
106346640
cit-r.1
for
102631191
cit-r.1
for
102613704
gma-u.5
for
100779473
gma-u.5
for
100817786
vvi-u.5
for
100253686
vvi-u.5
for
100259844
ppo-u.5
for
7457559
ppo-u.5
for
18098356
mtr-u.5
for
25497848
mtr-u.5
for
25494475
sly-u.5
for
101250345
sly-u.5
for
101264032
sot-r.1
for
102602144
sot-r.1
for
102580767
nta-r.1
for
107760343
nta-r.1
for
107796320
nta-r.1
for
107785285
osa-u.5
for
4346373
osa-u.5
for
4346062
zma-u.5
for
100381582
zma-u.5
for
100285271
tae-r.2
for
123159688
tae-r.2
for
123167500
tae-r.2
for
123151453
hvu-r.1
for
123411625
hvu-r.1
for
123399115
sbi-r.1
for
8062586
sbi-r.1
for
8063999
bdi-r.1
for
100821438
bdi-r.1
for
100846929
cre-r.1
for
CHLRE_10g428400v5


Ortholog ID: 3690
Species ghi ghi ghi ath ath bra bra bna bna bna cit cit gma gma vvi vvi ppo ppo mtr mtr sly sly sot sot nta nta nta osa osa zma zma tae tae tae hvu hvu sbi sbi bdi bdi cre
Symbol LOC107906366 LOC107928960 LOC107934157 AT3G19440 AT1G78910 LOC103869454 LOC103832368 LOC106346640 LOC106428326 LOC106377216 LOC102631191 LOC102613704 LOC100779473 LOC100817786 LOC100253686 LOC100259844 LOC7457559 LOC18098356 LOC25497848 LOC25494475 LOC101250345 LOC101264032 LOC102602144 LOC102580767 LOC107796320 LOC107785285 LOC107783994 LOC4346373 LOC4346062 LOC100381582 LOC100285271 LOC123167500 LOC123103274 LOC123111465 LOC123411625 LOC123399115 LOC8062586 LOC8063999 LOC100821438 LOC100846929 CHLRE_10g428400v5
Function* RNA pseudouridine synthase 3, mitochondrial RNA pseudouridine synthase 4, mitochondrial RNA pseudouridine synthase 4, mitochondrial Pseudouridine synthase family protein Pseudouridine synthase family protein RNA pseudouridine synthase 4, mitochondrial RNA pseudouridine synthase 3, mitochondrial RNA pseudouridine synthase 4, mitochondrial RNA pseudouridine synthase 4, mitochondrial RNA pseudouridine synthase 4, mitochondrial RNA pseudouridine synthase 4, mitochondrial RNA pseudouridine synthase 3, mitochondrial RNA pseudouridine synthase 4, mitochondrial RNA pseudouridine synthase 3, mitochondrial RNA pseudouridine synthase 4, mitochondrial RNA pseudouridine synthase 3, mitochondrial RNA pseudouridine synthase 4, mitochondrial RNA pseudouridine synthase 3, mitochondrial RNA pseudouridine synthase 3, mitochondrial RNA pseudouridine synthase 4, mitochondrial RNA pseudouridine synthase 4, mitochondrial RNA pseudouridine synthase 3, mitochondrial RNA pseudouridine synthase 4, mitochondrial RNA pseudouridine synthase 3, mitochondrial RNA pseudouridine synthase 4, mitochondrial-like RNA pseudouridine synthase 3, mitochondrial-like RNA pseudouridine synthase 4, mitochondrial RNA pseudouridine synthase 4, mitochondrial-like RNA pseudouridine synthase 3, mitochondrial-like RNA pseudouridine synthase 3 mitochondrial RNA pseudouridine synthase 4 mitochondrial RNA pseudouridine synthase 3, mitochondrial RNA pseudouridine synthase 4, mitochondrial RNA pseudouridine synthase 4, mitochondrial RNA pseudouridine synthase 3, mitochondrial RNA pseudouridine synthase 4, mitochondrial RNA pseudouridine synthase 4, mitochondrial RNA pseudouridine synthase 3, mitochondrial RNA pseudouridine synthase 4, mitochondrial RNA pseudouridine synthase 3, mitochondrial uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00564 Glycerophospholipid metabolism 2
ghi03020 RNA polymerase 2
ghi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00564 Glycerophospholipid metabolism 2
ghi03020 RNA polymerase 2
ghi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 3
bna04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 3
bna04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 2
bna03040 Spliceosome 2
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 3
mtr03082 ATP-dependent chromatin remodeling 3
mtr03083 Polycomb repressive complex 2
mtr03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04122 Sulfur relay system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00540 Lipopolysaccharide biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00540 Lipopolysaccharide biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 4
tae00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04120 Ubiquitin mediated proteolysis 3
tae03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04120 Ubiquitin mediated proteolysis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 4
hvu03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 2
bdi00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107906366 107928960 107934157 821478 844229 103869454 103832368 106346640 106428326 106377216 102631191 102613704 100779473 100817786 100253686 100259844 7457559 18098356 25497848 25494475 101250345 101264032 102602144 102580767 107796320 107785285 107783994 4346373 4346062 100381582 100285271 123167500 123103274 123111465 123411625 123399115 8062586 8063999 100821438 100846929 5728141
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