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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107943229   pentatricopeptide repeat-containing protein At2g20540 
 vvi-u.5   100251608   putative pentatricopeptide repeat-containing protein At3g01580 
 sot-r.1   107062230   pentatricopeptide repeat-containing protein DOT4, chloroplastic-like 
 nta-r.1   107798734   pentatricopeptide repeat-containing protein At1g11290, chloroplastic-like 
 nta-r.1   107811120   pentatricopeptide repeat-containing protein At1g11290, chloroplastic-like 

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Top 50 coexpressed genes to 107943229 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107943229 (ghi-r.1 coexpression data)

CoexMap"107943229"


ghiLOC107943229 | Entrez gene ID : 107943229    
Species ghi vvi sot nta sbi osa gma sly cit mtr bra tae ath bna hvu ppo zma cre bdi
Paralog 1 1 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009451 [list] [network] RNA modification  (557 genes)  IEA  
GO CC
GO:0043231 [list] [network] intracellular membrane-bounded organelle  (14879 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (3053 genes)  IEA  
GO:0005515 [list] [network] protein binding  (10797 genes)  IEA  
Protein XP_016732463.1 [sequence] [blastp]
XP_040962630.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  E.R. 2,  mito 1,  cyto_E.R. 1  (predict for XP_016732463.1)
chlo 6,  E.R. 2,  mito 1,  cyto_E.R. 1  (predict for XP_040962630.1)
Subcellular
localization
TargetP
mito 7,  chlo 3  (predict for XP_016732463.1)
mito 7,  chlo 3  (predict for XP_040962630.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107943229
vvi-u.5
for
100251608
sot-r.1
for
107062230
nta-r.1
for
107798734
nta-r.1
for
107811120


Ortholog ID: 18826
Species ghi vvi sot nta nta
Symbol LOC107943229 LOC100251608 LOC107062230 LOC107798734 LOC107811120
Function* pentatricopeptide repeat-containing protein At2g20540 putative pentatricopeptide repeat-containing protein At3g01580 pentatricopeptide repeat-containing protein DOT4, chloroplastic-like pentatricopeptide repeat-containing protein At1g11290, chloroplastic-like pentatricopeptide repeat-containing protein At1g11290, chloroplastic-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00960 Tropane, piperidine and pyridine alkaloid biosynthesis 3
ghi03018 RNA degradation 2
ghi03008 Ribosome biogenesis in eukaryotes 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107943229 100251608 107062230 107798734 107811120
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