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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   121209353   homeobox protein knotted-1-like 1 
 ghi-r.1   107927170   homeobox protein knotted-1-like 1 
 ghi-r.1   107930537   homeobox protein knotted-1-like 2 
 ghi-r.1   107933765   homeobox protein knotted-1-like 1 
 ath-u.5   KNAT2   homeobox knotted-like protein 
 ath-u.5   STM   KNOX/ELK homeobox transcription factor 
 ath-u.5   KNAT6   homeobox protein knotted-1-like 6 
 bra-r.6   103840767   homeobox protein knotted-1-like 6 
 bra-r.6   103852657   homeobox protein knotted-1-like 2 
 bra-r.6   103858468   homeobox protein knotted-1-like 1 
 bna-r.1   106404904   homeobox protein knotted-1-like 2 
 bna-r.1   106414253   homeobox protein knotted-1-like 6 
 bna-r.1   106420956   homeobox protein knotted-1-like 6 
 cit-r.1   102609444   homeobox protein knotted-1-like LET6 
 cit-r.1   102615394   homeotic protein knotted-1 
 gma-u.5   100803730   homeobox protein knotted-1-like 6 
 gma-u.5   100803095   homeobox protein knotted-1-like 
 gma-u.5   100801995   homeobox protein knotted-1-like LET6 
 vvi-u.5   100267474   homeobox protein SBH1 
 vvi-u.5   100264808   homeobox protein knotted-1-like 1 
 vvi-u.5   100255834   homeobox protein knotted-1-like 2 
 ppo-u.5   112327500   homeobox protein knotted-1-like 1 
 ppo-u.5   7460768   homeobox protein knotted-1-like 6 
 ppo-u.5   7463625   homeobox protein SBH1 
 mtr-u.5   11406488   homeobox protein knotted-1-like 1 
 mtr-u.5   11415594   homeobox protein knotted-1-like 6 
 mtr-u.5   25486232   homeobox protein SBH1 
 sly-u.5   T6   class I knotted-like homeodomain protein 
 sly-u.5   KN4   knotted homeodomain protein 4 
 sot-r.1   102579398   homeobox protein knotted-1-like 1-like 
 sot-r.1   102577616   POTH1 
 nta-r.1   107780680   homeobox protein knotted-1-like 6 
 nta-r.1   107759204   homeobox protein knotted-1-like LET6 
 nta-r.1   107826559   homeobox protein knotted-1-like LET6 
 osa-u.5   4342320   homeobox protein knotted-1-like 12 
 zma-u.5   606458   knotted related homeobox 8 
 zma-u.5   100283277   homeobox protein rough sheath 1 
 zma-u.5   100283504   KNOX1 domain containing protein 
 tae-r.2   123113454   homeobox protein rough sheath 1 
 tae-r.2   123045058   homeobox protein knotted-1-like 12 
 tae-r.2   123110107   homeobox protein knotted-1-like 10 
 hvu-r.1   123415825   homeobox protein knotted-1-like 10 
 sbi-r.1   8059916   homeobox protein rough sheath 1 
 sbi-r.1   8054187   homeobox protein knotted-1-like 4 
 sbi-r.1   8084184   homeobox protein rough sheath 1 
 bdi-r.1   100839205   homeobox protein knotted-1-like 10 
 bdi-r.1   100833629   homeobox protein knotted-1-like 4 
 bdi-r.1   100843507   homeobox protein KNOX3 

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Top 50 coexpressed genes to 121209353 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 121209353 (ghi-r.1 coexpression data)

CoexMap"121209353"


ghiLOC121209353 | Entrez gene ID : 121209353    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 3 3 3 2 3 3 3 3 2 2 3 1 3 3 1 3 3 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006357 [list] [network] regulation of transcription by RNA polymerase II  (1121 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (7681 genes)  IEA  
GO MF
GO:0000978 [list] [network] RNA polymerase II cis-regulatory region sequence-specific DNA binding  (605 genes)  IEA  
GO:0000981 [list] [network] DNA-binding transcription factor activity, RNA polymerase II-specific  (729 genes)  IEA  
Protein XP_040935860.1 [sequence] [blastp]
XP_040935861.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9,  plas 1,  cysk 1,  cysk_plas 1  (predict for XP_040935860.1)
nucl 9,  plas 1,  cysk 1,  cysk_plas 1  (predict for XP_040935861.1)
Subcellular
localization
TargetP
other 8  (predict for XP_040935860.1)
other 8  (predict for XP_040935861.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
121209353
ghi-r.1
for
107927170
ghi-r.1
for
107930537
ghi-r.1
for
107933765
ath-u.5
for
KNAT2
ath-u.5
for
STM
ath-u.5
for
KNAT6
bra-r.6
for
103840767
bra-r.6
for
103852657
bra-r.6
for
103858468
bna-r.1
for
106404904
bna-r.1
for
106414253
bna-r.1
for
106420956
cit-r.1
for
102609444
cit-r.1
for
102615394
gma-u.5
for
100803730
gma-u.5
for
100803095
gma-u.5
for
100801995
vvi-u.5
for
100267474
vvi-u.5
for
100264808
vvi-u.5
for
100255834
ppo-u.5
for
112327500
ppo-u.5
for
7460768
ppo-u.5
for
7463625
mtr-u.5
for
11406488
mtr-u.5
for
11415594
mtr-u.5
for
25486232
sly-u.5
for
T6
sly-u.5
for
KN4
sot-r.1
for
102579398
sot-r.1
for
102577616
nta-r.1
for
107780680
nta-r.1
for
107759204
nta-r.1
for
107826559
osa-u.5
for
4342320
zma-u.5
for
606458
zma-u.5
for
100283277
zma-u.5
for
100283504
tae-r.2
for
123113454
tae-r.2
for
123045058
tae-r.2
for
123110107
hvu-r.1
for
123415825
sbi-r.1
for
8059916
sbi-r.1
for
8054187
sbi-r.1
for
8084184
bdi-r.1
for
100839205
bdi-r.1
for
100833629
bdi-r.1
for
100843507


Ortholog ID: 275
Species ghi ghi ghi ath ath ath bra bra bra bna bna cit cit cit gma gma gma vvi vvi ppo ppo mtr mtr mtr sly sly sly sot sot nta nta osa osa zma zma zma tae tae tae sbi sbi sbi bdi bdi
Symbol LOC107924993 LOC107938311 LOC107895047 KNAT2 STM KNAT6 LOC103852657 LOC103858468 LOC103835665 LOC106404904 LOC125600843 LOC102609444 LOC102615394 LOC102614106 LOC100803095 LOC100800822 LOC100786454 LOC100255834 LOC100248152 LOC112327500 LOC7478899 LOC11406488 LOC11415594 LOC25482021 T6 KN1 TKn3 POTH15 LOC102601860 LOC107817797 LOC107781949 LOC4342320 LOC4337701 LOC541960 LOC541961 LOC542487 LOC123180293 LOC123180294 LOC123090945 LOC8059916 LOC8071273 LOC8059967 LOC100839205 LOC100832589
Function* homeobox protein SBH1 homeobox protein knotted-1-like 2 homeobox protein knotted-1-like 1 homeobox knotted-like protein KNOX/ELK homeobox transcription factor homeobox protein knotted-1-like 6 homeobox protein knotted-1-like 2 homeobox protein knotted-1-like 1 homeobox protein knotted-1-like 6 homeobox protein knotted-1-like 2 homeobox protein knotted-1-like 6 homeobox protein knotted-1-like LET6 homeotic protein knotted-1 homeobox protein SHOOT MERISTEMLESS homeobox protein knotted-1-like homeotic protein knotted-1 homeobox protein knotted-1-like 6 homeobox protein knotted-1-like 2 homeobox protein knotted-1-like LET6 homeobox protein knotted-1-like 1 homeobox protein knotted-1-like 1 homeobox protein knotted-1-like 1 homeobox protein knotted-1-like 6 homeotic protein knotted-1 class I knotted-like homeodomain protein homeotic protein knotted-1 knotted 3 protein homeobox protein knotted-1-like LET6-like homeotic protein knotted-1 homeobox protein knotted-1-like 1 homeobox protein knotted-1-like 6 homeobox protein knotted-1-like 12 homeobox protein knotted-1-like 10 liguleless 4 knotted related homeobox 5 liguleless 3 homeobox protein knotted-1-like 10 homeobox protein knotted-1-like 10 homeobox protein KNOX3 homeobox protein rough sheath 1 homeobox protein knotted-1-like 10 homeobox protein knotted-1-like 7 homeobox protein knotted-1-like 10 homeobox protein rough sheath 1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00940 Phenylpropanoid biosynthesis 5
cit00941 Flavonoid biosynthesis 2
cit00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00430 Taurine and hypotaurine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00010 Glycolysis / Gluconeogenesis 2
sot00071 Fatty acid degradation 2
sot00350 Tyrosine metabolism 2
sot00620 Pyruvate metabolism 2
sot01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107924993 107938311 107895047 843388 842534 838946 103852657 103858468 103835665 106404904 125600843 102609444 102615394 102614106 100803095 100800822 100786454 100255834 100248152 112327500 7478899 11406488 11415594 25482021 543520 544007 544029 102581859 102601860 107817797 107781949 4342320 4337701 541960 541961 542487 123180293 123180294 123090945 8059916 8071273 8059967 100839205 100832589
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