ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bna-r.1	125609092	uncharacterized LOC125609092
bna-r.1	125575625	uncharacterized LOC125575625
bna-r.1	111212277	uncharacterized LOC111212277
bna-r.1	111197976	uncharacterized LOC111197976
bra-r.6	103847708	uncharacterized LOC103847708
bra-r.6	103870480	uncharacterized LOC103870480
ath-u.5	AT3G10250	histidine-tRNA ligase
ath-u.5	AT5G04090	histidine-tRNA ligase
ghi-r.1	107942590	uncharacterized LOC107942590
ghi-r.1	107938354	uncharacterized LOC107938354
ghi-r.1	107925903	uncharacterized LOC107925903
cit-r.1	102607807	hypothetical protein
gma-u.5	100813964	uncharacterized LOC100813964
gma-u.5	100787548	uncharacterized LOC100787548
vvi-u.5	100265940	uncharacterized LOC100265940
ppo-u.5	7458928	uncharacterized LOC7458928
ppo-u.5	7496087	uncharacterized LOC7496087
mtr-u.5	25483306	uncharacterized LOC25483306
sly-u.5	101268817	uncharacterized LOC101268817
sly-u.5	101257399	uncharacterized LOC101257399
sly-u.5	101257030	uncharacterized LOC101257030
sot-r.1	102601506	uncharacterized LOC102601506
sot-r.1	102594587	uncharacterized LOC102594587
nta-r.1	107786232	uncharacterized LOC107786232
nta-r.1	107781998	uncharacterized LOC107781998
nta-r.1	107805798	uncharacterized LOC107805798
osa-u.5	4328235	uncharacterized LOC4328235
osa-u.5	112936035	uncharacterized LOC112936035
zma-u.5	112136098	uncharacterized LOC112136098
zma-u.5	100282328	plant-specific domain TIGR01589 family protein
zma-u.5	103626595	uncharacterized LOC103626595
tae-r.2	123132144	uncharacterized LOC123132144
tae-r.2	123136175	uncharacterized LOC123136175
tae-r.2	123161994	uncharacterized LOC123161994
hvu-r.1	123407144	uncharacterized LOC123407144
hvu-r.1	123403274	uncharacterized LOC123403274
sbi-r.1	8064955	uncharacterized LOC8064955
sbi-r.1	8057537	uncharacterized LOC8057537
bdi-r.1	100830065	uncharacterized LOC100830065
bdi-r.1	100833809	uncharacterized LOC100833809
cre-r.1	CHLRE_09g397150v5	uncharacterized protein

Top 50 coexpressed genes to 125609092 (bna-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 125609092 (bna-r.1 coexpression data)

CoexMap"125609092"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

Protein

XP_048635960.1 [sequence] [blastp]
XP_048635961.1 [sequence] [blastp]
XP_048635962.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 7, cyto_nucl 4, cyto 1	(predict for XP_048635960.1)
nucl 7, cyto_nucl 4, cyto 1	(predict for XP_048635961.1)
nucl 7, cyto_nucl 4, cyto 1	(predict for XP_048635962.1)

Subcellular
localization
TargetP

mito 7, other 6	(predict for XP_048635960.1)
mito 7, other 6	(predict for XP_048635961.1)
mito 7, other 6	(predict for XP_048635962.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bna-r.1 for 125609092	bna-r.1 for 125575625	bna-r.1 for 111212277	bna-r.1 for 111197976	bra-r.6 for 103847708	bra-r.6 for 103870480	ath-u.5 for AT3G10250	ath-u.5 for AT5G04090	ghi-r.1 for 107942590	ghi-r.1 for 107938354	ghi-r.1 for 107925903	cit-r.1 for 102607807	gma-u.5 for 100813964	gma-u.5 for 100787548	vvi-u.5 for 100265940	ppo-u.5 for 7458928	ppo-u.5 for 7496087	mtr-u.5 for 25483306	sly-u.5 for 101268817	sly-u.5 for 101257399	sly-u.5 for 101257030	sot-r.1 for 102601506	sot-r.1 for 102594587	nta-r.1 for 107786232	nta-r.1 for 107781998	nta-r.1 for 107805798	osa-u.5 for 4328235	osa-u.5 for 112936035	zma-u.5 for 112136098	zma-u.5 for 100282328	zma-u.5 for 103626595	tae-r.2 for 123132144	tae-r.2 for 123136175	tae-r.2 for 123161994	hvu-r.1 for 123407144	hvu-r.1 for 123403274	sbi-r.1 for 8064955	sbi-r.1 for 8057537	bdi-r.1 for 100830065	bdi-r.1 for 100833809	cre-r.1 for CHLRE_09g397150v5

Ortholog

Ortholog ID: 2809

Species

bna

bra

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

uncharacterized LOC125609092

uncharacterized LOC111197976

uncharacterized BNAA01G31890D

uncharacterized LOC103847708

uncharacterized LOC103870480

histidine-tRNA ligase

uncharacterized LOC107942590

uncharacterized LOC107938354

uncharacterized LOC107925903

hypothetical protein

uncharacterized LOC100813964

uncharacterized LOC100787548

uncharacterized LOC100265940

uncharacterized LOC7458928

uncharacterized LOC7496087

uncharacterized LOC25483306

uncharacterized LOC101268817

uncharacterized LOC101257399

uncharacterized LOC101257030

uncharacterized LOC102601506

uncharacterized LOC102594587

uncharacterized LOC107781998

uncharacterized LOC107805798

uncharacterized LOC107781476

uncharacterized LOC4328235

uncharacterized LOC112936035

uncharacterized LOC112136098

plant-specific domain TIGR01589 family protein

uncharacterized LOC103626595

uncharacterized LOC123171590

uncharacterized LOC123143686

uncharacterized LOC123148584

uncharacterized LOC123407144

uncharacterized LOC123403274

uncharacterized LOC8064955

uncharacterized LOC8057537

uncharacterized LOC100830065

uncharacterized LOC100833809

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04120	Ubiquitin mediated proteolysis	2
bna03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04136	Autophagy - other	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00540	Lipopolysaccharide biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00564	Glycerophospholipid metabolism	2
gma00592	alpha-Linolenic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04120	Ubiquitin mediated proteolysis	3
ppo04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00195	Photosynthesis	10
nta00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00561	Glycerolipid metabolism	2
nta00564	Glycerophospholipid metabolism	2
nta04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00260	Glycine, serine and threonine metabolism	2
osa00670	One carbon pool by folate	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03083	Polycomb repressive complex	3
zma04120	Ubiquitin mediated proteolysis	3
zma04141	Protein processing in endoplasmic reticulum	3
zma00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04075	Plant hormone signal transduction	3
zma03008	Ribosome biogenesis in eukaryotes	2
zma04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03460	Fanconi anemia pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00564	Glycerophospholipid metabolism	4
tae00100	Steroid biosynthesis	3
tae00561	Glycerolipid metabolism	3
tae00565	Ether lipid metabolism	3
tae00590	Arachidonic acid metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00500	Starch and sucrose metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

125609092

111197976

106381208

103847708

103870480

820187

830288

107942590

107938354

107925903

102607807

100813964

100787548

100265940

7458928

7496087

25483306

101268817

101257399

101257030

102601506

102594587

107781998

107805798

107781476

4328235

112936035

112136098

100282328

103626595

123171590

123143686

123148584

123407144

123403274

8064955

8057537

100830065

100833809

5720183

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Species	bna	bra	ath	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	2	2	3	1	2	1	2	1	3	2	3	2	3	3	2	2	2	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 125609092 (bna-r.1 coexpression data)

Top 50 enrichment test to 125609092 (bna-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**