ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-m.4.lig	AT2G19550	alpha/beta-Hydrolases superfamily protein
ath-m.9	AT2G19550	alpha/beta-Hydrolases superfamily protein
ath-m.4.bio	AT2G19550	alpha/beta-Hydrolases superfamily protein
ath-m.4.hor	AT2G19550	alpha/beta-Hydrolases superfamily protein
ath-m.4.str	AT2G19550	alpha/beta-Hydrolases superfamily protein
ath-m.4.tis	AT2G19550	alpha/beta-Hydrolases superfamily protein
ath-u.5	AT3G47560	alpha/beta-Hydrolases superfamily protein
ath-u.5	AT3G47590	alpha/beta-Hydrolases superfamily protein
ath-u.5	AT5G11910	alpha/beta-Hydrolases superfamily protein
bra-r.6	103855944	uncharacterized LOC103855944
bna-r.1	106395642	uncharacterized LOC106395642
bna-r.1	106395664	uncharacterized LOC106395664
bna-r.1	106345200	lipase 1
ghi-r.1	107887244	uncharacterized LOC107887244
ghi-r.1	107907138	uncharacterized LOC107907138
ghi-r.1	107937706	uncharacterized LOC107937706
cit-r.1	102612460	putative uncharacterized protein YDL057W
cit-r.1	102623159	hypothetical protein
gma-u.5	100817361	uncharacterized LOC100817361
gma-u.5	100808881	uncharacterized LOC100808881
gma-u.5	100786089	uncharacterized LOC100786089
vvi-u.5	100247545	uncharacterized LOC100247545
vvi-u.5	100257601	uncharacterized LOC100257601
ppo-u.5	18107677	uncharacterized LOC18107677
ppo-u.5	7470694	uncharacterized LOC7470694
mtr-u.5	11438770	uncharacterized LOC11438770
mtr-u.5	25494225	uncharacterized LOC25494225
sly-u.5	101257586	putative uncharacterized protein YDL057W
sly-u.5	101267625	uncharacterized LOC101267625
sly-u.5	101253588	putative F-box protein At1g76830
sot-r.1	102589585	uncharacterized LOC102589585
sot-r.1	102598383	putative uncharacterized protein YDL057W
nta-r.1	107768421	putative uncharacterized protein YDL057W
nta-r.1	107798634	putative uncharacterized protein YDL057W
nta-r.1	107800772	uncharacterized LOC107800772
osa-u.5	4323861	uncharacterized LOC4323861
osa-u.5	4323862	uncharacterized LOC4323862
osa-u.5	4331942	small ribosomal subunit protein uS10c
zma-u.5	100283210	Pimeloyl-ACP methyl ester carboxylesterase-like
zma-u.5	100283073	uncharacterized LOC100283073
zma-u.5	100282186	uncharacterized LOC100282186
tae-r.2	123069987	uncharacterized LOC123069987
tae-r.2	123098396	cyanelle 30S ribosomal protein S10
tae-r.2	123064912	uncharacterized LOC123064912
hvu-r.1	123443757	uncharacterized LOC123443757
hvu-r.1	123449435	cyanelle 30S ribosomal protein S10
hvu-r.1	123448279	uncharacterized LOC123448279
sbi-r.1	8068991	mycophenolic acid acyl-glucuronide esterase, mitochondrial
sbi-r.1	8078211	uncharacterized LOC8078211
sbi-r.1	8078634	non-haem bromoperoxidase BPO-A2
bdi-r.1	100821605	uncharacterized LOC100821605
bdi-r.1	100828686	uncharacterized LOC100828686
bdi-r.1	100837865	uncharacterized LOC100837865
cre-r.1	CHLRE_12g535550v5	uncharacterized protein

Top 50 coexpressed genes to AT2G19550 (ath-m.4.lig coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to AT2G19550 (ath-m.4.lig coexpression data)

CoexMap"816474"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0016020 [list] [network] membrane

(3740 genes)

HDA

GO MF

Protein

NP_179545.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 4, chlo 1, mito 1, plas 1, chlo_mito 1, mito_plas 1

(predict for NP_179545.1)

Subcellular
localization
TargetP

other 7

(predict for NP_179545.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.4.lig for AT2G19550	ath-m.9 for AT2G19550	ath-m.4.bio for AT2G19550	ath-m.4.hor for AT2G19550	ath-m.4.str for AT2G19550	ath-m.4.tis for AT2G19550	ath-u.5 for AT3G47560	ath-u.5 for AT3G47590	ath-u.5 for AT5G11910	bra-r.6 for 103855944	bna-r.1 for 106395642	bna-r.1 for 106395664	bna-r.1 for 106345200	ghi-r.1 for 107887244	ghi-r.1 for 107907138	ghi-r.1 for 107937706	cit-r.1 for 102612460	cit-r.1 for 102623159	gma-u.5 for 100817361	gma-u.5 for 100808881	gma-u.5 for 100786089	vvi-u.5 for 100247545	vvi-u.5 for 100257601	ppo-u.5 for 18107677	ppo-u.5 for 7470694	mtr-u.5 for 11438770	mtr-u.5 for 25494225	sly-u.5 for 101257586	sly-u.5 for 101267625	sly-u.5 for 101253588	sot-r.1 for 102589585	sot-r.1 for 102598383	nta-r.1 for 107768421	nta-r.1 for 107798634	nta-r.1 for 107800772	osa-u.5 for 4323861	osa-u.5 for 4323862	osa-u.5 for 4331942	zma-u.5 for 100283210	zma-u.5 for 100283073	zma-u.5 for 100282186	tae-r.2 for 123069987	tae-r.2 for 123098396	tae-r.2 for 123064912	hvu-r.1 for 123443757	hvu-r.1 for 123449435	hvu-r.1 for 123448279	sbi-r.1 for 8068991	sbi-r.1 for 8078211	sbi-r.1 for 8078634	bdi-r.1 for 100821605	bdi-r.1 for 100828686	bdi-r.1 for 100837865	cre-r.1 for CHLRE_12g535550v5

Ortholog

Ortholog ID: 1300

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

alpha/beta-Hydrolases superfamily protein

uncharacterized LOC103855944

lipase 1

uncharacterized LOC106395664

non-heme chloroperoxidase CPO-A1-like

uncharacterized LOC107887244

uncharacterized LOC107907138

putative uncharacterized protein YDL057W

hypothetical protein

alpha/beta hydrolase domain-containing protein

uncharacterized LOC100783719

uncharacterized LOC100783246

uncharacterized LOC100247545

uncharacterized LOC100257601

uncharacterized LOC18107677

uncharacterized LOC7470694

uncharacterized LOC11438770

uncharacterized LOC11417861

putative uncharacterized protein YDL057W

uncharacterized LOC101267625

putative F-box protein At1g76830

uncharacterized LOC102589585

putative uncharacterized protein YDL057W

uncharacterized LOC107788871

uncharacterized LOC4323861

uncharacterized LOC4323862

putative uncharacterized protein YDL057W

Pimeloyl-ACP methyl ester carboxylesterase-like

uncharacterized LOC100282186

uncharacterized LOC100276031

uncharacterized LOC123069987

cyanelle 30S ribosomal protein S10

uncharacterized LOC123142436

uncharacterized LOC123443757

cyanelle 30S ribosomal protein S10

uncharacterized LOC123448279

mycophenolic acid acyl-glucuronide esterase, mitochondrial

non-haem bromoperoxidase BPO-A2

uncharacterized LOC8078632

uncharacterized LOC100821605

uncharacterized LOC100828686

uncharacterized LOC100837865

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03022	Basal transcription factors	2
bna03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	7
ghi00130	Ubiquinone and other terpenoid-quinone biosynthesis	2
ghi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	6
ghi03060	Protein export	3
ghi04141	Protein processing in endoplasmic reticulum	3
ghi04145	Phagosome	3
ghi00900	Terpenoid backbone biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00190	Oxidative phosphorylation	3
cit01200	Carbon metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03060	Protein export	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00280	Valine, leucine and isoleucine degradation	3
vvi00410	beta-Alanine metabolism	2
vvi00640	Propanoate metabolism	2
vvi01200	Carbon metabolism	2
vvi00240	Pyrimidine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	4
ppo00240	Pyrimidine metabolism	2
ppo00220	Arginine biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00190	Oxidative phosphorylation	8
sot04145	Phagosome	7
sot04142	Lysosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	2
nta03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	2
nta03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03010	Ribosome	6
osa00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00600	Sphingolipid metabolism	2
osa04142	Lysosome	2
osa04136	Autophagy - other	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	13

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04142	Lysosome	3
zma00270	Cysteine and methionine metabolism	2
zma00470	D-Amino acid metabolism	2
zma00520	Amino sugar and nucleotide sugar metabolism	2
zma04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	17

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04517	IgSF CAM signaling	4
tae04518	Integrin signaling	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03050	Proteasome	5
hvu00190	Oxidative phosphorylation	3
hvu04145	Phagosome	3
hvu03013	Nucleocytoplasmic transport	2
hvu03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03010	Ribosome	10
hvu01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03022	Basal transcription factors	2
sbi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00410	beta-Alanine metabolism	2
sbi04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03050	Proteasome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre04146	Peroxisome	2

Expression

Expression pattern

Entrez Gene ID^*

823910

831064

103855944

103873578

106395664

106451123

107887244

107907138

102612460

102623159

100784783

100783719

100783246

100247545

100257601

18107677

7470694

11438770

11417861

101257586

101267625

101253588

102589585

102598383

107768421

107798634

107788871

4323861

4323862

4339458

100283210

100282186

100276031

123069987

123098396

123142436

123443757

123449435

123448279

8068991

8078634

8078632

100821605

100828686

100837865

5718498

The preparation time of this page was 0.1 [sec].


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	9	1	3	3	2	3	2	2	2	3	2	3	3	3	3	3	3	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT2G19550 (ath-m.4.lig coexpression data)

Top 50 enrichment test to AT2G19550 (ath-m.4.lig coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**