ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-m.4.lig	GEM	GRAM domain family protein
ath-u.5	GEM	GRAM domain family protein
ath-r.7	GEM	GRAM domain family protein
ath-m.9	GEM	GRAM domain family protein
ath-e.2	GEM	GRAM domain family protein
ath-m.4.bio	GEM	GRAM domain family protein
ath-m.4.hor	GEM	GRAM domain family protein
ath-m.4.str	GEM	GRAM domain family protein
ath-m.4.tis	GEM	GRAM domain family protein
ath-u.5	AT4G01600	GRAM domain family protein
ath-u.5	FIP1	FH interacting protein 1
bra-r.6	103864356	GLABRA2 expression modulator-like
bra-r.6	103837890	GLABRA2 expression modulator
bra-r.6	103836810	GEM-like protein 2
bna-r.1	125586318	GLABRA2 expression modulator-like
bna-r.1	125586319	GLABRA2 expression modulator-like
bna-r.1	106429381	GLABRA2 expression modulator
ghi-r.1	107911622	GLABRA2 expression modulator
ghi-r.1	107924063	GEM-like protein 1
ghi-r.1	107897511	GLABRA2 expression modulator
cit-r.1	102608009	GEM-like protein 1
cit-r.1	102613712	GEM-like protein 2
cit-r.1	102629618	GLABRA2 expression modulator
gma-u.5	100804033	GEM-like protein 2-like
gma-u.5	100794961	GEM-like protein 1-like
gma-u.5	100793162	GLABRA2 expression modulator
vvi-u.5	100258780	GLABRA2 expression modulator
vvi-u.5	100233038	GEM-like 1
ppo-u.5	7461808	GEM-like protein 1
ppo-u.5	7486828	GEM-like protein 1
mtr-u.5	11431799	GEM-like protein 1
mtr-u.5	11444272	GLABRA2 expression modulator
mtr-u.5	11415426	GEM-like protein 2
sly-u.5	101267762	GLABRA2 expression modulator
sly-u.5	101253700	GEM-like protein 1
sly-u.5	101246526	GLABRA2 expression modulator
sot-r.1	102582094	GLABRA2 expression modulator-like
sot-r.1	102589412	GEM-like protein 1
sot-r.1	102590090	GLABRA2 expression modulator-like
nta-r.1	107790233	putative GEM-like protein 3
nta-r.1	107795310	GEM-like protein 1
nta-r.1	107794890	putative GEM-like protein 3
osa-u.5	4331881	GEM-like protein 1
osa-u.5	4334033	GEM-like protein 1
osa-u.5	4347314	GLABRA2 expression modulator
zma-u.5	100284886	uncharacterized LOC100284886
zma-u.5	100216713	FIP1
zma-u.5	100284924	FIP1
tae-r.2	123091033	GEM-like protein 1
tae-r.2	123088088	GEM-like protein 1
tae-r.2	123086946	GEM-like protein 1
hvu-r.1	123395838	GLABRA2 expression modulator-like
hvu-r.1	123447703	GEM-like protein 1
hvu-r.1	123449660	GEM-like protein 1
sbi-r.1	8057641	GEM-like protein 1
sbi-r.1	8060508	GEM-like protein 1
bdi-r.1	100839868	GEM-like protein 1
bdi-r.1	100824228	GEM-like protein 1

Top 50 coexpressed genes to GEM (ath-m.4.lig coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to GEM (ath-m.4.lig coexpression data)

CoexMap"816780"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0010482 [list] [network] regulation of epidermal cell division	(3 genes)	IMP
GO:0010026 [list] [network] trichome differentiation	(86 genes)	IMP
GO:0048765 [list] [network] root hair cell differentiation	(132 genes)	IMP
GO:0040029 [list] [network] epigenetic regulation of gene expression	(174 genes)	IDA

GO CC

GO:0005773 [list] [network] vacuole	(984 genes)	HDA
GO:0005634 [list] [network] nucleus	(10367 genes)	ISM

GO MF

Protein

NP_565538.1 [sequence] [blastp]
NP_973510.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 4, cyto 2, nucl 1, mito 1, cyto_plas 1	(predict for NP_565538.1)
chlo 5, nucl 3, chlo_mito 3	(predict for NP_973510.1)

Subcellular
localization
TargetP

other 9	(predict for NP_565538.1)
other 9	(predict for NP_973510.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.4.lig for GEM	ath-u.5 for GEM	ath-r.7 for GEM	ath-m.9 for GEM	ath-e.2 for GEM	ath-m.4.bio for GEM	ath-m.4.hor for GEM	ath-m.4.str for GEM	ath-m.4.tis for GEM	ath-u.5 for AT4G01600	ath-u.5 for FIP1	bra-r.6 for 103864356	bra-r.6 for 103837890	bra-r.6 for 103836810	bna-r.1 for 125586318	bna-r.1 for 125586319	bna-r.1 for 106429381	ghi-r.1 for 107911622	ghi-r.1 for 107924063	ghi-r.1 for 107897511	cit-r.1 for 102608009	cit-r.1 for 102613712	cit-r.1 for 102629618	gma-u.5 for 100804033	gma-u.5 for 100794961	gma-u.5 for 100793162	vvi-u.5 for 100258780	vvi-u.5 for 100233038	ppo-u.5 for 7461808	ppo-u.5 for 7486828	mtr-u.5 for 11431799	mtr-u.5 for 11444272	mtr-u.5 for 11415426	sly-u.5 for 101267762	sly-u.5 for 101253700	sly-u.5 for 101246526	sot-r.1 for 102582094	sot-r.1 for 102589412	sot-r.1 for 102590090	nta-r.1 for 107790233	nta-r.1 for 107795310	nta-r.1 for 107794890	osa-u.5 for 4331881	osa-u.5 for 4334033	osa-u.5 for 4347314	zma-u.5 for 100284886	zma-u.5 for 100216713	zma-u.5 for 100284924	tae-r.2 for 123091033	tae-r.2 for 123088088	tae-r.2 for 123086946	hvu-r.1 for 123395838	hvu-r.1 for 123447703	hvu-r.1 for 123449660	sbi-r.1 for 8057641	sbi-r.1 for 8060508	bdi-r.1 for 100839868	bdi-r.1 for 100824228

Ortholog

Ortholog ID: 1301

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

GEM

FIP1

Function^*

GRAM domain family protein

FH interacting protein 1

GLABRA2 expression modulator-like

GLABRA2 expression modulator

GEM-like protein 2

GLABRA2 expression modulator

GEM-like protein 1

GLABRA2 expression modulator

GEM-like protein 1

GEM-like protein 2

GLABRA2 expression modulator

GEM-like protein 1-like

GLABRA2 expression modulator

GEM-like 1

GEM-like protein 1

GLABRA2 expression modulator

GEM-like protein 2

GLABRA2 expression modulator

GEM-like protein 1

GLABRA2 expression modulator

GLABRA2 expression modulator-like

GEM-like protein 1

GLABRA2 expression modulator-like

putative GEM-like protein 3

GEM-like protein 1

GLABRA2 expression modulator

uncharacterized LOC100284886

FIP1

GEM-like protein 1

GLABRA2 expression modulator-like

GEM-like protein 1

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04144	Endocytosis	3
ath01250	Biosynthesis of nucleotide sugars	2
ath00230	Purine metabolism	2
ath00240	Pyrimidine metabolism	2
ath01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04016	MAPK signaling pathway - plant	2
bra04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04144	Endocytosis	3
bra03250	Viral life cycle - HIV-1	2
bra03272	Virion - Hepatitis viruses	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03083	Polycomb repressive complex	2
bra04120	Ubiquitin mediated proteolysis	2
bra04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04141	Protein processing in endoplasmic reticulum	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03272	Virion - Hepatitis viruses	4
bna04144	Endocytosis	4
bna03440	Homologous recombination	2
bna04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04144	Endocytosis	8
bna04130	SNARE interactions in vesicular transport	6
bna04145	Phagosome	4
bna04148	Efferocytosis	4
bna03272	Virion - Hepatitis viruses	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04144	Endocytosis	5
ghi03272	Virion - Hepatitis viruses	4
ghi04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00100	Steroid biosynthesis	5
ghi00909	Sesquiterpenoid and triterpenoid biosynthesis	5
ghi00330	Arginine and proline metabolism	4
ghi00410	beta-Alanine metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04144	Endocytosis	2
cit04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	2
gma03410	Base excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04120	Ubiquitin mediated proteolysis	3
ppo04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04141	Protein processing in endoplasmic reticulum	8
ppo04626	Plant-pathogen interaction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00190	Oxidative phosphorylation	3
mtr04141	Protein processing in endoplasmic reticulum	3
mtr03050	Proteasome	3
mtr00020	Citrate cycle (TCA cycle)	2
mtr01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04141	Protein processing in endoplasmic reticulum	9
mtr03060	Protein export	2
mtr04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03050	Proteasome	9
sly04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot01240	Biosynthesis of cofactors	2
sot00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04141	Protein processing in endoplasmic reticulum	5
sot04016	MAPK signaling pathway - plant	4
sot04070	Phosphatidylinositol signaling system	4
sot04075	Plant hormone signal transduction	4
sot04626	Plant-pathogen interaction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00230	Purine metabolism	3
nta00240	Pyrimidine metabolism	3
nta01232	Nucleotide metabolism	3
nta01240	Biosynthesis of cofactors	3
nta04016	MAPK signaling pathway - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04141	Protein processing in endoplasmic reticulum	6
nta04120	Ubiquitin mediated proteolysis	2
nta03250	Viral life cycle - HIV-1	2
nta03272	Virion - Hepatitis viruses	2
nta04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04141	Protein processing in endoplasmic reticulum	6
nta03250	Viral life cycle - HIV-1	2
nta03272	Virion - Hepatitis viruses	2
nta04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04626	Plant-pathogen interaction	3
osa04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04144	Endocytosis	3
osa03272	Virion - Hepatitis viruses	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00520	Amino sugar and nucleotide sugar metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00965	Betalain biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00940	Phenylpropanoid biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03050	Proteasome	4
tae04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	2
hvu00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04144	Endocytosis	3
hvu03060	Protein export	3
hvu04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04144	Endocytosis	4
sbi04141	Protein processing in endoplasmic reticulum	3
sbi03250	Viral life cycle - HIV-1	2
sbi03272	Virion - Hepatitis viruses	2
sbi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04144	Endocytosis	4
sbi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00500	Starch and sucrose metabolism	2
bdi04075	Plant hormone signal transduction	2

Expression

Expression pattern

Entrez Gene ID^*

816780

828085

839714

103864356

103837890

103836810

106363704

106389559

106361697

107951392

107899907

107957801

102608009

102613712

102629697

100794961

100793162

100258780

100233038

7486828

7468874

11431799

11444272

11415426

101267762

101253700

101246526

102582094

102589412

102590090

107790233

107795310

107832608

4331881

4334033

4347314

100284886

100216713

100284924

123091033

123090250

123395838

123447703

123449660

8057641

8060508

100839868

100824228

The preparation time of this page was 0.2 [sec].


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	11	3	3	3	3	3	2	2	3	3	3	3	3	3	3	3	2	2	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to GEM (ath-m.4.lig coexpression data)

Top 50 enrichment test to GEM (ath-m.4.lig coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**