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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.lig   SDH4   succinate dehydrogenase subunit 4 
 ath-u.5   SDH4   succinate dehydrogenase subunit 4 
 ath-r.7   SDH4   succinate dehydrogenase subunit 4 
 ath-m.9   SDH4   succinate dehydrogenase subunit 4 
 ath-e.2   SDH4   succinate dehydrogenase subunit 4 
 ath-m.4.bio   SDH4   succinate dehydrogenase subunit 4 
 ath-m.4.hor   SDH4   succinate dehydrogenase subunit 4 
 ath-m.4.str   SDH4   succinate dehydrogenase subunit 4 
 ath-m.4.tis   SDH4   succinate dehydrogenase subunit 4 
 bra-r.6   103858221   succinate dehydrogenase subunit 4, mitochondrial 
 bna-r.1   106438284   succinate dehydrogenase subunit 4, mitochondrial-like 
 bna-r.1   106438303   succinate dehydrogenase subunit 4, mitochondrial 
 bna-r.1   106415722   succinate dehydrogenase subunit 4, mitochondrial 
 ghi-r.1   sdh4   succinate dehydrogenase subunit 4 
 cit-r.1   sdh4   succinate dehydrogenase subunit 4 
 gma-u.5   100500565   SQR/QFR domain-containing protein 
 gma-u.5   100779728   succinate dehydrogenase subunit 4, mitochondrial 
 vvi-u.5   sdh4   succinate dehydrogenase subunit 4 
 ppo-u.5   7470248   uncharacterized protein At2g39795, mitochondrial 
 mtr-u.5   11436549   uncharacterized LOC11436549 
 sly-u.5   sdh4   succinate dehydrogenase subunit 4 
 nta-r.1   orf125e   hypothetical protein 
 osa-u.5   4338591   succinate dehydrogenase subunit 4, mitochondrial-like 
 osa-u.5   4326521   succinate dehydrogenase subunit 4, mitochondrial-like 
 zma-u.5   100277027   uncharacterized LOC100277027 
 zma-u.5   100274754   uncharacterized LOC100274754 
 tae-r.2   123053800   succinate dehydrogenase subunit 4, mitochondrial 
 tae-r.2   123063298   succinate dehydrogenase subunit 4, mitochondrial 
 tae-r.2   123072275   succinate dehydrogenase subunit 4, mitochondrial 
 hvu-r.1   123440345   succinate dehydrogenase subunit 4, mitochondrial-like 
 hvu-r.1   123445373   succinate dehydrogenase subunit 4, mitochondrial-like 
 sbi-r.1   8077918   succinate dehydrogenase subunit 4, mitochondrial 
 bdi-r.1   100846386   succinate dehydrogenase subunit 4, mitochondrial 
 bdi-r.1   100825203   succinate dehydrogenase subunit 4, mitochondrial 

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Top 50 coexpressed genes to SDH4 (ath-m.4.lig coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to SDH4 (ath-m.4.lig coexpression data)

CoexMap"819261"


athSDH4 | Entrez gene ID : 819261      
Species ath bra bna ghi cit gma vvi ppo mtr sly nta osa zma tae hvu sbi bdi cre sot
Paralog 9 1 3 1 1 2 1 1 1 1 1 2 2 3 2 1 2 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath00020 [list] [network] Citrate cycle (TCA cycle) (64 genes)
ath00190 [list] [network] Oxidative phosphorylation (170 genes)
ath01200 [list] [network] Carbon metabolism (275 genes)
GO BP
GO:0006121 [list] [network] mitochondrial electron transport, succinate to ubiquinone  (8 genes)  IEA  
GO:0006099 [list] [network] tricarboxylic acid cycle  (12 genes)  TAS  
GO CC
GO:0045273 [list] [network] respiratory chain complex II (succinate dehydrogenase)  (13 genes)  IDA ISS  
GO:0005739 [list] [network] mitochondrion  (4244 genes)  IDA ISM  
GO MF
GO:0008177 [list] [network] succinate dehydrogenase (quinone) activity  (5 genes)  ISS  
Protein NP_566077.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 3,  plas 2,  chlo_mito 2,  mito 1,  golg 1  (predict for NP_566077.1)
Subcellular
localization
TargetP
mito 6,  chlo 3  (predict for NP_566077.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.lig
for
SDH4
ath-u.5
for
SDH4
ath-r.7
for
SDH4
ath-m.9
for
SDH4
ath-e.2
for
SDH4
ath-m.4.bio
for
SDH4
ath-m.4.hor
for
SDH4
ath-m.4.str
for
SDH4
ath-m.4.tis
for
SDH4
bra-r.6
for
103858221
bna-r.1
for
106438284
bna-r.1
for
106438303
bna-r.1
for
106415722
ghi-r.1
for
sdh4
cit-r.1
for
sdh4
gma-u.5
for
100500565
gma-u.5
for
100779728
vvi-u.5
for
sdh4
ppo-u.5
for
7470248
mtr-u.5
for
11436549
sly-u.5
for
sdh4
nta-r.1
for
orf125e
osa-u.5
for
4338591
osa-u.5
for
4326521
zma-u.5
for
100277027
zma-u.5
for
100274754
tae-r.2
for
123053800
tae-r.2
for
123063298
tae-r.2
for
123072275
hvu-r.1
for
123440345
hvu-r.1
for
123445373
sbi-r.1
for
8077918
bdi-r.1
for
100846386
bdi-r.1
for
100825203


Ortholog ID: 7190
Species ath bra bna bna bna ghi cit gma gma vvi ppo mtr sly nta osa osa zma zma tae tae tae hvu hvu sbi bdi bdi
Symbol SDH4 LOC103858221 LOC106438284 LOC106415722 LOC106450504 sdh4 sdh4 LOC100500565 LOC100779728 sdh4 LOC7470248 LOC11436549 sdh4 orf125e LOC4338591 LOC4326521 LOC100277027 LOC100274754 LOC123063298 LOC123072275 LOC123080506 LOC123440345 LOC123445373 LOC8077918 LOC100846386 LOC100825203
Function* succinate dehydrogenase subunit 4 succinate dehydrogenase subunit 4, mitochondrial succinate dehydrogenase subunit 4, mitochondrial-like succinate dehydrogenase subunit 4, mitochondrial succinate dehydrogenase subunit 4, mitochondrial-like succinate dehydrogenase subunit 4 succinate dehydrogenase subunit 4 SQR/QFR domain-containing protein succinate dehydrogenase subunit 4, mitochondrial succinate dehydrogenase subunit 4 uncharacterized protein At2g39795, mitochondrial uncharacterized LOC11436549 succinate dehydrogenase subunit 4 hypothetical protein succinate dehydrogenase subunit 4, mitochondrial-like succinate dehydrogenase subunit 4, mitochondrial-like uncharacterized LOC100277027 uncharacterized LOC100274754 succinate dehydrogenase subunit 4, mitochondrial succinate dehydrogenase subunit 4, mitochondrial succinate dehydrogenase subunit 4, mitochondrial succinate dehydrogenase subunit 4, mitochondrial-like succinate dehydrogenase subunit 4, mitochondrial-like succinate dehydrogenase subunit 4, mitochondrial succinate dehydrogenase subunit 4, mitochondrial succinate dehydrogenase subunit 4, mitochondrial
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00190 Oxidative phosphorylation 8
ath00020 Citrate cycle (TCA cycle) 4
ath01200 Carbon metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00190 Oxidative phosphorylation 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00020 Citrate cycle (TCA cycle) 6
bna00190 Oxidative phosphorylation 6
bna01200 Carbon metabolism 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00020 Citrate cycle (TCA cycle) 6
bna00190 Oxidative phosphorylation 6
bna01200 Carbon metabolism 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00020 Citrate cycle (TCA cycle) 6
bna00190 Oxidative phosphorylation 6
bna01200 Carbon metabolism 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00190 Oxidative phosphorylation 12
ghi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00190 Oxidative phosphorylation 12
cit03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00190 Oxidative phosphorylation 7
gma00020 Citrate cycle (TCA cycle) 4
gma01200 Carbon metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00190 Oxidative phosphorylation 6
gma00020 Citrate cycle (TCA cycle) 3
gma01200 Carbon metabolism 3
gma04146 Peroxisome 2
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00190 Oxidative phosphorylation 11
vvi03010 Ribosome 5
vvi00020 Citrate cycle (TCA cycle) 2
vvi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00270 Cysteine and methionine metabolism 5
ppo01200 Carbon metabolism 4
ppo01230 Biosynthesis of amino acids 4
ppo00260 Glycine, serine and threonine metabolism 3
ppo01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00190 Oxidative phosphorylation 8
mtr00020 Citrate cycle (TCA cycle) 3
mtr01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00190 Oxidative phosphorylation 9
sly03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00190 Oxidative phosphorylation 10
nta03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00190 Oxidative phosphorylation 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00190 Oxidative phosphorylation 7
zma00020 Citrate cycle (TCA cycle) 6
zma01200 Carbon metabolism 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00190 Oxidative phosphorylation 7
zma00020 Citrate cycle (TCA cycle) 4
zma01200 Carbon metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00190 Oxidative phosphorylation 10
tae04148 Efferocytosis 5
tae00020 Citrate cycle (TCA cycle) 3
tae01200 Carbon metabolism 3
tae00600 Sphingolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00190 Oxidative phosphorylation 9
tae04148 Efferocytosis 5
tae00020 Citrate cycle (TCA cycle) 3
tae01200 Carbon metabolism 3
tae04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00190 Oxidative phosphorylation 4
tae00020 Citrate cycle (TCA cycle) 3
tae01200 Carbon metabolism 3
tae04120 Ubiquitin mediated proteolysis 3
tae00600 Sphingolipid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00190 Oxidative phosphorylation 3
hvu03040 Spliceosome 2
hvu00020 Citrate cycle (TCA cycle) 2
hvu01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03050 Proteasome 9
hvu00190 Oxidative phosphorylation 5
hvu04148 Efferocytosis 3
hvu00020 Citrate cycle (TCA cycle) 2
hvu01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00190 Oxidative phosphorylation 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00190 Oxidative phosphorylation 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00190 Oxidative phosphorylation 9
bdi03083 Polycomb repressive complex 2
bdi04120 Ubiquitin mediated proteolysis 2
bdi04141 Protein processing in endoplasmic reticulum 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 819261 103858221 106438284 106415722 106450504 24679543 36487033 100500565 100779728 7498540 7470248 11436549 34678270 3205327 4338591 4326521 100277027 100274754 123063298 123072275 123080506 123440345 123445373 8077918 100846386 100825203
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