ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-m.4.lig	AT3G14860	NHL domain-containing protein
ath-u.5	AT3G14860	NHL domain-containing protein
ath-r.7	AT3G14860	NHL domain-containing protein
ath-m.9	AT3G14860	NHL domain-containing protein
ath-e.2	AT3G14860	NHL domain-containing protein
ath-m.4.bio	AT3G14860	NHL domain-containing protein
ath-m.4.hor	AT3G14860	NHL domain-containing protein
ath-m.4.str	AT3G14860	NHL domain-containing protein
ath-m.4.tis	AT3G14860	NHL domain-containing protein
ath-u.5	AT5G14890	potassium transporter
ath-u.5	AT1G23880	NHL domain-containing protein
ath-u.5	AT1G23890	NHL domain-containing protein
bra-r.6	103859595	uncharacterized LOC103859595
bra-r.6	103831565	uncharacterized LOC103831565
bra-r.6	103840721	uncharacterized LOC103840721
bna-r.1	106367580	uncharacterized LOC106367580
bna-r.1	BNAC05G19040D	RING finger protein nhl-1
bna-r.1	106446501	uncharacterized LOC106446501
ghi-r.1	107898670	uncharacterized LOC107898670
ghi-r.1	107933404	uncharacterized LOC107933404
ghi-r.1	107939214	uncharacterized LOC107939214
cit-r.1	102629403	hypothetical protein
cit-r.1	102628926	uncharacterized LOC102628926
cit-r.1	102628107	uncharacterized LOC102628107
gma-u.5	100816542	uncharacterized LOC100816542
gma-u.5	100816017	uncharacterized LOC100816017
vvi-u.5	100266244	uncharacterized LOC100266244
vvi-u.5	100245328	uncharacterized LOC100245328
vvi-u.5	100263777	uncharacterized LOC100263777
ppo-u.5	7459053	uncharacterized LOC7459053
ppo-u.5	7493556	uncharacterized LOC7493556
ppo-u.5	18095451	uncharacterized LOC18095451
mtr-u.5	25501282	uncharacterized LOC25501282
mtr-u.5	11407246	uncharacterized LOC11407246
mtr-u.5	11416686	uncharacterized LOC11416686
sly-u.5	101255990	uncharacterized LOC101255990
sly-u.5	101247577	uncharacterized LOC101247577
sly-u.5	101256281	uncharacterized LOC101256281
sot-r.1	102585637	uncharacterized LOC102585637
sot-r.1	102584279	uncharacterized LOC102584279
sot-r.1	102585981	uncharacterized LOC102585981
nta-r.1	107773447	uncharacterized LOC107773447
nta-r.1	107775734	uncharacterized LOC107775734
nta-r.1	107780249	uncharacterized LOC107780249
osa-u.5	4340723	uncharacterized LOC4340723
osa-u.5	4330615	uncharacterized LOC4330615
osa-u.5	4328817	uncharacterized LOC4328817
zma-u.5	100276297	uncharacterized LOC100276297
zma-u.5	100192979	uncharacterized LOC100192979
zma-u.5	100276420	uncharacterized LOC100276420
tae-r.2	123051748	uncharacterized LOC123051748
tae-r.2	123043874	uncharacterized LOC123043874
tae-r.2	123127431	uncharacterized LOC123127431
hvu-r.1	123406157	uncharacterized LOC123406157
hvu-r.1	123401816	uncharacterized LOC123401816
hvu-r.1	123411411	uncharacterized LOC123411411
sbi-r.1	8077695	uncharacterized LOC8077695
sbi-r.1	8073818	uncharacterized LOC8073818
sbi-r.1	8073549	uncharacterized LOC8073549
bdi-r.1	100824092	uncharacterized LOC100824092
bdi-r.1	100839308	uncharacterized LOC100839308
bdi-r.1	100834977	uncharacterized LOC100834977

Top 50 coexpressed genes to AT3G14860 (ath-m.4.lig coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to AT3G14860 (ath-m.4.lig coexpression data)

CoexMap"820715"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0005576 [list] [network] extracellular region

(3158 genes)

ISM

GO MF

Protein

NP_188104.2 [sequence] [blastp]
NP_974315.1 [sequence] [blastp]

Subcellular
localization
wolf

vacu 5, plas 1, extr 1, golg 1, golg_plas 1	(predict for NP_188104.2)
vacu 5, nucl 1, extr 1, golg 1	(predict for NP_974315.1)

Subcellular
localization
TargetP

chlo 4, scret 3	(predict for NP_188104.2)
chlo 4, scret 3	(predict for NP_974315.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.4.lig for AT3G14860	ath-u.5 for AT3G14860	ath-r.7 for AT3G14860	ath-m.9 for AT3G14860	ath-e.2 for AT3G14860	ath-m.4.bio for AT3G14860	ath-m.4.hor for AT3G14860	ath-m.4.str for AT3G14860	ath-m.4.tis for AT3G14860	ath-u.5 for AT5G14890	ath-u.5 for AT1G23880	ath-u.5 for AT1G23890	bra-r.6 for 103859595	bra-r.6 for 103831565	bra-r.6 for 103840721	bna-r.1 for 106367580	bna-r.1 for BNAC05G19040D	bna-r.1 for 106446501	ghi-r.1 for 107898670	ghi-r.1 for 107933404	ghi-r.1 for 107939214	cit-r.1 for 102629403	cit-r.1 for 102628926	cit-r.1 for 102628107	gma-u.5 for 100816542	gma-u.5 for 100816017	vvi-u.5 for 100266244	vvi-u.5 for 100245328	vvi-u.5 for 100263777	ppo-u.5 for 7459053	ppo-u.5 for 7493556	ppo-u.5 for 18095451	mtr-u.5 for 25501282	mtr-u.5 for 11407246	mtr-u.5 for 11416686	sly-u.5 for 101255990	sly-u.5 for 101247577	sly-u.5 for 101256281	sot-r.1 for 102585637	sot-r.1 for 102584279	sot-r.1 for 102585981	nta-r.1 for 107773447	nta-r.1 for 107775734	nta-r.1 for 107780249	osa-u.5 for 4340723	osa-u.5 for 4330615	osa-u.5 for 4328817	zma-u.5 for 100276297	zma-u.5 for 100192979	zma-u.5 for 100276420	tae-r.2 for 123051748	tae-r.2 for 123043874	tae-r.2 for 123127431	hvu-r.1 for 123406157	hvu-r.1 for 123401816	hvu-r.1 for 123411411	sbi-r.1 for 8077695	sbi-r.1 for 8073818	sbi-r.1 for 8073549	bdi-r.1 for 100824092	bdi-r.1 for 100839308	bdi-r.1 for 100834977

Ortholog

Ortholog ID: 709

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

NHL domain-containing protein

uncharacterized LOC103831565

uncharacterized LOC103846452

RING finger protein nhl-1

uncharacterized LOC106401544

uncharacterized LOC107898670

uncharacterized LOC107958576

uncharacterized LOC107960332

hypothetical protein

uncharacterized LOC102628926

uncharacterized LOC102628107

uncharacterized LOC100781836

uncharacterized LOC100793916

uncharacterized LOC100797570

uncharacterized LOC100266244

uncharacterized LOC100245328

uncharacterized LOC100243227

uncharacterized LOC18095451

uncharacterized LOC18106640

uncharacterized LOC25501282

uncharacterized LOC11416686

uncharacterized LOC25501285

uncharacterized LOC101255990

uncharacterized LOC101247577

uncharacterized LOC101256281

uncharacterized LOC102585637

uncharacterized LOC102585981

uncharacterized LOC102586185

uncharacterized LOC107773447

uncharacterized LOC107801174

uncharacterized LOC107805830

uncharacterized LOC4330615

uncharacterized LOC4328817

uncharacterized LOC4345572

uncharacterized LOC100276297

uncharacterized LOC100276874

uncharacterized LOC100384592

uncharacterized LOC123137286

uncharacterized LOC123156753

uncharacterized LOC123150357

uncharacterized LOC123406157

uncharacterized LOC123401816

uncharacterized LOC123424925

uncharacterized LOC8073818

uncharacterized LOC8073549

uncharacterized LOC8061543

uncharacterized LOC100824092

uncharacterized LOC100839308

uncharacterized LOC104584212

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00040	Pentose and glucuronate interconversions	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00562	Inositol phosphate metabolism	6
bna00564	Glycerophospholipid metabolism	4
bna00565	Ether lipid metabolism	4
bna00053	Ascorbate and aldarate metabolism	2
bna01250	Biosynthesis of nucleotide sugars	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04814	Motor proteins	3
ghi00290	Valine, leucine and isoleucine biosynthesis	2
ghi00660	C5-Branched dibasic acid metabolism	2
ghi01210	2-Oxocarboxylic acid metabolism	2
ghi01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit01200	Carbon metabolism	2
cit00620	Pyruvate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04145	Phagosome	2
vvi04517	IgSF CAM signaling	2
vvi04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00010	Glycolysis / Gluconeogenesis	2
ppo00030	Pentose phosphate pathway	2
ppo01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04120	Ubiquitin mediated proteolysis	4
mtr04141	Protein processing in endoplasmic reticulum	3
mtr03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04145	Phagosome	4
sly04517	IgSF CAM signaling	4
sly04814	Motor proteins	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04075	Plant hormone signal transduction	3
nta00513	Various types of N-glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00100	Steroid biosynthesis	2
nta04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00270	Cysteine and methionine metabolism	2
nta00670	One carbon pool by folate	2
nta04981	Folate transport and metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00190	Oxidative phosphorylation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma01230	Biosynthesis of amino acids	5
zma01210	2-Oxocarboxylic acid metabolism	4
zma00290	Valine, leucine and isoleucine biosynthesis	3
zma00770	Pantothenate and CoA biosynthesis	3
zma00650	Butanoate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03020	RNA polymerase	2
hvu03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	6
sbi03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00190	Oxidative phosphorylation	2
bdi04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03020	RNA polymerase	2
bdi03420	Nucleotide excision repair	2

Expression

Expression pattern

Entrez Gene ID^*

838999

839000

843364

103831565

103846452

106401546

106401544

107898670

107958576

107960332

102629403

102628926

102628107

100781836

100793916

100797570

100266244

100245328

100243227

18095451

18106640

25501282

11416686

25501285

101255990

101247577

101256281

102585637

102585981

102586185

107773447

107801174

107805830

4330615

4328817

4345572

100276297

100276874

100384592

123137286

123156753

123150357

123406157

123401816

123424925

8073818

8073549

8061543

100824092

100839308

104584212

The preparation time of this page was 0.2 [sec].


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	12	3	3	3	3	2	3	3	3	3	3	3	3	3	3	3	3	3	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT3G14860 (ath-m.4.lig coexpression data)

Top 50 enrichment test to AT3G14860 (ath-m.4.lig coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**