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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.lig   UVR3   DNA photolyase family protein 
 ath-u.5   UVR3   DNA photolyase family protein 
 ath-r.7   UVR3   DNA photolyase family protein 
 ath-m.9   UVR3   DNA photolyase family protein 
 ath-e.2   UVR3   DNA photolyase family protein 
 ath-m.4.bio   UVR3   DNA photolyase family protein 
 ath-m.4.hor   UVR3   DNA photolyase family protein 
 ath-m.4.str   UVR3   DNA photolyase family protein 
 ath-m.4.tis   UVR3   DNA photolyase family protein 
 bra-r.6   103840624   (6-4)DNA photolyase 
 bna-r.1   106349575   (6-4)DNA photolyase-like 
 bna-r.1   106387503   (6-4)DNA photolyase 
 ghi-r.1   107962174   (6-4)DNA photolyase 
 ghi-r.1   107901744   (6-4)DNA photolyase 
 cit-r.1   102617013   (6-4)DNA photolyase 
 gma-u.5   100780347   (6-4)DNA photolyase 
 vvi-u.5   100256713   (6-4)DNA photolyase 
 ppo-u.5   7475723   (6-4)DNA photolyase 
 mtr-u.5   25491344   (6-4)DNA photolyase 
 sly-u.5   101262697   (6-4)DNA photolyase 
 sot-r.1   102605735   (6-4)DNA photolyase 
 nta-r.1   107773193   (6-4)DNA photolyase 
 nta-r.1   107790260   (6-4)DNA photolyase 
 osa-u.5   4328669   (6-4)DNA photolyase 
 zma-u.5   100280217   uncharacterized LOC100280217 
 tae-r.2   123144349   (6-4)DNA photolyase 
 hvu-r.1   123402574   (6-4)DNA photolyase 
 sbi-r.1   8082933   (6-4)DNA photolyase 
 bdi-r.1   100823069   (6-4)DNA photolyase 
 cre-r.1   CHLRE_06g278251v5   uncharacterized protein 

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Top 50 coexpressed genes to UVR3 (ath-m.4.lig coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to UVR3 (ath-m.4.lig coexpression data)

CoexMap"820804"


athUVR3 | Entrez gene ID : 820804      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 2 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006290 [list] [network] pyrimidine dimer repair  (8 genes)  IMP  
GO:0009411 [list] [network] response to UV  (141 genes)  IMP  
GO CC
GO:0042644 [list] [network] chloroplast nucleoid  (48 genes)  IDA  
GO:0005739 [list] [network] mitochondrion  (4244 genes)  IDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  IDA ISM  
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA  
GO MF
GO:0003914 [list] [network] DNA (6-4) photolyase activity  (1 genes)  IDA ISS  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001030703.1 [sequence] [blastp]
NP_566520.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 8,  chlo_mito 4,  nucl 1  (predict for NP_001030703.1)
chlo 9,  chlo_mito 5  (predict for NP_566520.1)
Subcellular
localization
TargetP
mito 5  (predict for NP_001030703.1)
mito 5  (predict for NP_566520.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.lig
for
UVR3
ath-u.5
for
UVR3
ath-r.7
for
UVR3
ath-m.9
for
UVR3
ath-e.2
for
UVR3
ath-m.4.bio
for
UVR3
ath-m.4.hor
for
UVR3
ath-m.4.str
for
UVR3
ath-m.4.tis
for
UVR3
bra-r.6
for
103840624
bna-r.1
for
106349575
bna-r.1
for
106387503
ghi-r.1
for
107962174
ghi-r.1
for
107901744
cit-r.1
for
102617013
gma-u.5
for
100780347
vvi-u.5
for
100256713
ppo-u.5
for
7475723
mtr-u.5
for
25491344
sly-u.5
for
101262697
sot-r.1
for
102605735
nta-r.1
for
107773193
nta-r.1
for
107790260
osa-u.5
for
4328669
zma-u.5
for
100280217
tae-r.2
for
123144349
hvu-r.1
for
123402574
sbi-r.1
for
8082933
bdi-r.1
for
100823069
cre-r.1
for
CHLRE_06g278251v5


Ortholog ID: 11303
Species ath bra bna bna ghi ghi cit gma vvi ppo mtr sly sot nta nta osa zma tae hvu sbi bdi cre
Symbol UVR3 LOC103840624 LOC106349575 LOC106387503 LOC107962174 LOC107901744 LOC102617013 LOC100780347 LOC100256713 LOC7475723 LOC25491344 LOC101262697 LOC102605735 LOC107773193 LOC107790260 LOC4328669 LOC100280217 LOC123144349 LOC123402574 LOC8082933 LOC100823069 CHLRE_06g278251v5
Function* DNA photolyase family protein (6-4)DNA photolyase (6-4)DNA photolyase-like (6-4)DNA photolyase (6-4)DNA photolyase (6-4)DNA photolyase (6-4)DNA photolyase (6-4)DNA photolyase (6-4)DNA photolyase (6-4)DNA photolyase (6-4)DNA photolyase (6-4)DNA photolyase (6-4)DNA photolyase (6-4)DNA photolyase (6-4)DNA photolyase (6-4)DNA photolyase uncharacterized LOC100280217 (6-4)DNA photolyase (6-4)DNA photolyase (6-4)DNA photolyase (6-4)DNA photolyase uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04712 Circadian rhythm - plant 4
bna03420 Nucleotide excision repair 2
bna04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04712 Circadian rhythm - plant 4
bna03420 Nucleotide excision repair 2
bna04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00760 Nicotinate and nicotinamide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00760 Nicotinate and nicotinamide metabolism 4
ghi03420 Nucleotide excision repair 2
ghi04120 Ubiquitin mediated proteolysis 2
ghi04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03420 Nucleotide excision repair 2
gma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03018 RNA degradation 2
ppo04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 3
sot00941 Flavonoid biosynthesis 2
sot04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00941 Flavonoid biosynthesis 4
bdi04712 Circadian rhythm - plant 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 820804 103840624 106349575 106387503 107962174 107901744 102617013 100780347 100256713 7475723 25491344 101262697 102605735 107773193 107790260 4328669 100280217 123144349 123402574 8082933 100823069 5723611
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