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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.lig   RDM1   RNA-DIRECTED DNA METHYLATION 1 
 ath-u.5   RDM1   RNA-DIRECTED DNA METHYLATION 1 
 ath-r.7   RDM1   RNA-DIRECTED DNA METHYLATION 1 
 ath-m.9   RDM1   RNA-DIRECTED DNA METHYLATION 1 
 ath-e.2   RDM1   RNA-DIRECTED DNA METHYLATION 1 
 ath-m.4.bio   RDM1   RNA-DIRECTED DNA METHYLATION 1 
 ath-m.4.hor   RDM1   RNA-DIRECTED DNA METHYLATION 1 
 ath-m.4.str   RDM1   RNA-DIRECTED DNA METHYLATION 1 
 ath-m.4.tis   RDM1   RNA-DIRECTED DNA METHYLATION 1 
 bra-r.6   103869016   protein RDM1 
 bra-r.6   103859969   protein RDM1 
 bna-r.1   106444158   protein RDM1-like 
 bna-r.1   125608770   protein RDM1-like 
 bna-r.1   125596867   protein RDM1-like 
 ghi-r.1   107914882   protein RDM1 
 ghi-r.1   107897696   protein RDM1 
 cit-r.1   102618009   protein RDM1 
 gma-u.5   100500129   uncharacterized LOC100500129 
 gma-u.5   100780782   protein RDM1 
 vvi-u.5   100244199   protein RDM1 
 ppo-u.5   7473419   protein RDM1 
 mtr-u.5   11443154   protein RDM1 
 sly-u.5   101255147   protein RDM1 
 sot-r.1   107063298   protein RDM1-like 
 sot-r.1   107062706   protein RDM1-like 
 sot-r.1   107062700   protein RDM1-like 
 nta-r.1   107775798   protein RDM1 
 nta-r.1   107810485   protein RDM1-like 

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Top 50 coexpressed genes to RDM1 (ath-m.4.lig coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to RDM1 (ath-m.4.lig coexpression data)

CoexMap"821839"


athRDM1 | Entrez gene ID : 821839    
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta sbi cre tae zma osa bdi hvu
Paralog 9 2 3 2 1 2 1 1 1 1 3 2 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0030422 [list] [network] siRNA processing  (31 genes)  IMP  
GO:0080188 [list] [network] gene silencing by siRNA-directed DNA methylation  (44 genes)  IGI IMP  
GO CC
GO:0000419 [list] [network] RNA polymerase V complex  (21 genes)  IMP  
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO MF
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_188907.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 5,  plas 2,  extr 1,  cyto_plas 1  (predict for NP_188907.2)
Subcellular
localization
TargetP
other 9  (predict for NP_188907.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.lig
for
RDM1
ath-u.5
for
RDM1
ath-r.7
for
RDM1
ath-m.9
for
RDM1
ath-e.2
for
RDM1
ath-m.4.bio
for
RDM1
ath-m.4.hor
for
RDM1
ath-m.4.str
for
RDM1
ath-m.4.tis
for
RDM1
bra-r.6
for
103869016
bra-r.6
for
103859969
bna-r.1
for
106444158
bna-r.1
for
125608770
bna-r.1
for
125596867
ghi-r.1
for
107914882
ghi-r.1
for
107897696
cit-r.1
for
102618009
gma-u.5
for
100500129
gma-u.5
for
100780782
vvi-u.5
for
100244199
ppo-u.5
for
7473419
mtr-u.5
for
11443154
sly-u.5
for
101255147
sot-r.1
for
107063298
sot-r.1
for
107062706
sot-r.1
for
107062700
nta-r.1
for
107775798
nta-r.1
for
107810485


Ortholog ID: 9501
Species ath bra bra bna bna bna ghi ghi cit gma gma vvi ppo mtr sly sot sot sot nta nta
Symbol RDM1 LOC103869016 LOC103859969 LOC125608770 LOC106395418 LOC106451773 LOC107914882 LOC107897696 LOC102618009 LOC100500129 LOC100780782 LOC100244199 LOC7473419 LOC11443154 LOC101255147 LOC107063298 LOC102587972 LOC102594055 LOC107775798 LOC107810485
Function* RNA-DIRECTED DNA METHYLATION 1 protein RDM1 protein RDM1 protein RDM1-like protein RDM1-like protein RDM1-like protein RDM1 protein RDM1 protein RDM1 uncharacterized LOC100500129 protein RDM1 protein RDM1 protein RDM1 protein RDM1 protein RDM1 protein RDM1-like protein RDM1-like protein RDM1-like protein RDM1 protein RDM1-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 2
ghi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 2
ghi03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 7
cit00190 Oxidative phosphorylation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 2
sly04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 7
sot03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03050 Proteasome 5
sot03040 Spliceosome 4
sot03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
nta01240 Biosynthesis of cofactors 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 821839 103869016 103859969 125608770 106395418 106451773 107914882 107897696 102618009 100500129 100780782 100244199 7473419 11443154 101255147 107063298 102587972 102594055 107775798 107810485
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